Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH22160 | Soybean | cytosol, mitochondrion | 92.98 | 93.81 |
| PGSC0003DMT400046252 | Potato | cytosol | 79.82 | 80.53 |
| AT2G30410.1 | Thale cress | cytosol, mitochondrion | 77.19 | 77.88 |
| VIT_15s0021g01180.t01 | Wine grape | cytosol | 79.82 | 77.78 |
| Os02t0816500-01 | Rice | cytosol | 61.4 | 77.78 |
| Solyc01g068400.2.1 | Tomato | cytosol | 50.88 | 76.32 |
| EES06012 | Sorghum | cytosol | 74.56 | 75.89 |
| TraesCS5D01G038700.1 | Wheat | cytosol | 75.44 | 75.44 |
| TraesCS5B01G028900.1 | Wheat | cytosol | 75.44 | 75.44 |
| TraesCS5A01G030500.1 | Wheat | cytosol | 75.44 | 75.44 |
| Bra018315.1-P | Field mustard | cytosol | 71.93 | 74.55 |
| CDY10736 | Canola | cytosol | 71.93 | 74.55 |
| CDY02064 | Canola | cytosol | 71.05 | 73.64 |
| GSMUA_Achr1P20090_001 | Banana | cytosol, mitochondrion | 71.05 | 72.32 |
| TraesCS6A01G389600.1 | Wheat | mitochondrion | 64.04 | 71.57 |
| Bra022798.1-P | Field mustard | cytosol | 44.74 | 69.86 |
| HORVU6Hr1G090650.2 | Barley | cytosol | 35.96 | 65.08 |
| Zm00001d018478_P001 | Maize | extracellular | 75.44 | 58.9 |
| HORVU5Hr1G007960.1 | Barley | cytosol, plastid | 74.56 | 51.52 |
Protein Annotations
| Gene3D:1.20.58.90 | EntrezGene:100500215 | MapMan:20.3.3.1.1 | EMBL:ACUP02007781 | EMBL:BT091113 | UniProt:C6T107 |
| ncoils:Coil | EnsemblPlantsGene:GLYMA_12G219600 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 | GO:GO:0005874 | GO:GO:0007021 |
| GO:GO:0007023 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0048487 | EnsemblPlants:KRH27177 |
| ProteinID:KRH27177 | ProteinID:KRH27177.1 | PFAM:PD010430 | PFAM:PF02970 | PANTHER:PTHR21500 | SUPFAM:SSF46988 |
| InterPro:TBCA | InterPro:TBCA_sf | UniParc:UPI0001B156B3 | : | : | : |
Description
hypothetical protein
Coordinates
chr12:+:37921408..37923522
Molecular Weight (calculated)
12959.4 Da
IEP (calculated)
4.598
GRAVY (calculated)
-0.751
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MATTVRSLKI KTSTCKRIVK ELHSYEKEVE REAAKTADMK EKGADPYDLK QQENVLAESR MMIPDCRKRL EAALADLKGL LAELEESDEK ASPEIDEARN
101: TIVEVEKVFE TTED
101: TIVEVEKVFE TTED
001: MATIRNLKIK TSTCKRIVKE LHSYEKEVER EAAKTADMKD KGADPYDLKQ QENVLGESRM MIPDCHKRLE SALADLKSTL AELEETDEKE GPEIEDAKKT
101: VADVEKQFPT EDA
101: VADVEKQFPT EDA
Arabidopsis Description
TFCATubulin-folding cofactor A [Source:UniProtKB/Swiss-Prot;Acc:O04350]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.