Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_10s0003g05320.t01 | |
| VIT_17s0000g07580.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G30410.1 | VIT_17s0000g07580.t01 | AT3G48100.1 | 18642946 |
| AT2G30410.1 | VIT_10s0003g05320.t01 | AT4G20890.1 | 20638386 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G30410.1 | Thale cress | cytosol, mitochondrion | 77.78 | 80.53 |
| Os02t0816500-01 | Rice | cytosol | 61.54 | 80.0 |
| KRH27177 | Soybean | cytosol | 77.78 | 79.82 |
| KRH22160 | Soybean | cytosol, mitochondrion | 76.07 | 78.76 |
| Bra018315.1-P | Field mustard | cytosol | 72.65 | 77.27 |
| CDY10736 | Canola | cytosol | 72.65 | 77.27 |
| PGSC0003DMT400046252 | Potato | cytosol | 74.36 | 76.99 |
| GSMUA_Achr1P20090_001 | Banana | cytosol, mitochondrion | 73.5 | 76.79 |
| CDY02064 | Canola | cytosol | 71.79 | 76.36 |
| EES06012 | Sorghum | cytosol | 72.65 | 75.89 |
| TraesCS5A01G030500.1 | Wheat | cytosol | 71.79 | 73.68 |
| TraesCS5B01G028900.1 | Wheat | cytosol | 71.79 | 73.68 |
| TraesCS5D01G038700.1 | Wheat | cytosol | 71.79 | 73.68 |
| Bra022798.1-P | Field mustard | cytosol | 45.3 | 72.6 |
| Solyc01g068400.2.1 | Tomato | cytosol | 46.15 | 71.05 |
| TraesCS6A01G389600.1 | Wheat | mitochondrion | 59.83 | 68.63 |
| HORVU6Hr1G090650.2 | Barley | cytosol | 32.48 | 60.32 |
| Zm00001d018478_P001 | Maize | extracellular | 71.79 | 57.53 |
| HORVU5Hr1G007960.1 | Barley | cytosol, plastid | 70.94 | 50.3 |
Protein Annotations
| Gene3D:1.20.58.90 | EntrezGene:100246164 | wikigene:100246164 | MapMan:20.3.3.1.1 | EMBL:AM443930 | ProteinID:CAN82778 |
| ProteinID:CAN82778.1 | ProteinID:CCB43908 | ProteinID:CCB43908.1 | ncoils:Coil | UniProt:F6GVC5 | EMBL:FN594952 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005856 | GO:GO:0005874 | GO:GO:0007021 | GO:GO:0007023 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0048487 | EntrezGene:LOC100246164 | wikigene:LOC100246164 | PFAM:PD010430 |
| PFAM:PF02970 | PANTHER:PTHR21500 | SUPFAM:SSF46988 | InterPro:TBCA | InterPro:TBCA_sf | TIGR:TC58452 |
| UniParc:UPI000210A302 | ArrayExpress:VIT_15s0021g01180 | EnsemblPlantsGene:VIT_15s0021g01180 | EnsemblPlants:VIT_15s0021g01180.t01 | RefSeq:XP_002270593 | RefSeq:XP_002270593.1 |
Description
Tubulin-specific chaperone A [Source:UniProtKB/TrEMBL;Acc:F6GVC5]
Coordinates
chr15:-:11250617..11257528
Molecular Weight (calculated)
13301.7 Da
IEP (calculated)
4.659
GRAVY (calculated)
-0.857
Length
117 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGIMATIRN LKIKTSTCKR IIKEFHSYEK EVEREAAKTA DMKEKGADPY DLKQQENVLA ESRMMIPDCR KRLEASLADL KGTLAELEES NQKEGPEIED
101: ARSTTAEVDN FFQTTEG
101: ARSTTAEVDN FFQTTEG
001: MATIRNLKIK TSTCKRIVKE LHSYEKEVER EAAKTADMKD KGADPYDLKQ QENVLGESRM MIPDCHKRLE SALADLKSTL AELEETDEKE GPEIEDAKKT
101: VADVEKQFPT EDA
101: VADVEKQFPT EDA
Arabidopsis Description
TFCATubulin-folding cofactor A [Source:UniProtKB/Swiss-Prot;Acc:O04350]
SUBAcon: [cytosol,mitochondrion]
SUBAcon: [cytosol,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.