CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
extracellular 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES06012
EES08806

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G20890.1	EES06012	AT2G30410.1	20638386
AT5G44340.1	EES08806	AT3G50960.1	18390592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013139_P001	Maize	cytosol	65.17	98.98
Os03t0780600-01	Rice	plastid	98.65	98.87
TraesCS5D01G424100.1	Wheat	cytosol	97.75	97.75
TraesCS5B01G418700.1	Wheat	golgi	97.75	97.75
TraesCS5A01G416400.1	Wheat	cytosol	97.53	97.75
Zm00001d034022_P001	Maize	cytosol	57.53	97.71
GSMUA_Achr11P...	Banana	cytosol	76.4	97.14
EES04582	Sorghum	cytosol	97.3	97.09
KRH58404	Soybean	nucleus	95.96	96.61
KRH11812	Soybean	nucleus	96.63	96.41
GSMUA_Achr8P07060_001	Banana	cytosol	84.27	96.4
CDY31638	Canola	cytosol	96.18	96.4
KRH42279	Soybean	cytosol	95.96	96.39
KRH36829	Soybean	nucleus	96.4	96.19
VIT_10s0003g05320.t01	Wine grape	cytosol	96.18	96.18
GSMUA_Achr2P01410_001	Banana	cytosol	84.27	96.15
EER90205	Sorghum	cytosol	96.18	95.96
CDX84283	Canola	cytosol	96.18	95.96
GSMUA_Achr5P26680_001	Banana	cytosol	83.37	95.62
GSMUA_Achr3P23490_001	Banana	cytosol	79.78	95.17
KXG32297	Sorghum	cytosol	95.28	95.07
EER95686	Sorghum	cytosol	95.28	95.07
GSMUA_Achr5P00290_001	Banana	cytosol	83.82	94.91
EES01623	Sorghum	cytosol	95.28	94.85
CDX94014	Canola	cytosol	94.16	93.95
CDX98679	Canola	cytosol	94.16	93.95
Bra020912.1-P	Field mustard	cytosol	93.93	93.72
CDX76444	Canola	cytosol	93.71	93.5
CDY31428	Canola	cytosol	93.71	93.5
AT5G44340.1	Thale cress	cytosol	93.26	93.47
AT4G20890.1	Thale cress	cytosol	93.26	93.47
Bra038795.1-P	Field mustard	cytosol	93.26	93.26
CDX82788	Canola	cytosol	93.26	93.05
CDX79013	Canola	cytosol	93.26	93.05
CDY60599	Canola	cytosol	93.03	93.03
CDX96965	Canola	cytosol	92.81	92.81
EER93713	Sorghum	cytosol	92.81	92.81
Bra027544.1-P	Field mustard	cytosol	92.81	92.81
CDY14924	Canola	cytosol	92.81	92.6
Bra039506.1-P	Field mustard	cytosol	92.81	92.6
CDY13108	Canola	cytosol	92.58	92.58
CDY69221	Canola	cytosol	92.58	92.58
CDY49002	Canola	cytosol	92.36	92.36
Bra033737.1-P	Field mustard	cytosol	92.36	92.36
Bra013481.1-P	Field mustard	cytosol	92.13	91.93
Bra005395.1-P	Field mustard	cytosol	80.22	88.59
HORVU5Hr1G100900.2	Barley	cytosol	97.75	85.97
GSMUA_Achr6P19990_001	Banana	cytosol	79.1	85.02
OQU78011	Sorghum	cytosol	81.12	84.54
KXG37668	Sorghum	cytosol	42.92	42.35
KXG37669	Sorghum	cytosol	42.7	42.13
KXG36544	Sorghum	cytosol	42.02	41.56
EER92631	Sorghum	cytosol	41.35	41.07
EER93374	Sorghum	cytosol	41.35	40.89
EES19069	Sorghum	cytosol	35.28	33.48
OQU78051	Sorghum	cytosol	30.34	33.42

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	EntrezGene:8084157	InterPro:Beta-tubulin_BS
InterPro:Beta_tubulin	UniProt:C5WZ25	ncoils:Coil	EnsemblPlants:EER93354	ProteinID:EER93354	ProteinID:EER93354.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	PFAM:PF00091
PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588
PANTHER:PTHR11588:SF146	SMART:SM00864	SMART:SM00865	EnsemblPlantsGene:SORBI_3001G069800	SUPFAM:SSF52490	SUPFAM:SSF55307
unigene:Sbi.18354	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf
InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0001A82BE0	RefSeq:XP_002466356.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:5297793..5301176

Molecular Weight (calculated)

49894.0 Da

IEP (calculated)

4.489

GRAVY (calculated)

-0.337

Length

445 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVICDEHGI DATGRYAGDS DLQLERINVY YNEASGGRFV PRAVLMDLEP GTMDSVRSGP FGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLATP TFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK SSVCDIPPRG LKMAGTFVGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATA DEEYEDEEDE EAVAE

Best Arabidopsis Sequence Match ( AT5G12250.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVCDEHGI DPTGRYVGNS DLQLERVNVY YNEASCGRYV PRAILMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIAPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEGEYEEDE DEEEILDHE

Arabidopsis Description

TUBB6Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UPR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.