CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G258800.1	Wheat	cytosol	86.42	82.92
TraesCS1B01G269400.1	Wheat	cytosol	86.42	82.92
TraesCS1A01G258800.1	Wheat	golgi	86.18	82.7
KXG32297	Sorghum	cytosol	86.18	82.51
EER95686	Sorghum	cytosol	85.71	82.06
EES01623	Sorghum	cytosol	85.71	81.88
TraesCS1D01G309200.1	Wheat	cytosol	85.48	81.66
HORVU0Hr1G026030.2	Barley	cytosol	85.48	81.66
TraesCS1B01G320800.1	Wheat	cytosol	85.48	81.66
HORVU1Hr1G068170.1	Barley	cytosol	85.48	81.66
TraesCS1A01G309700.1	Wheat	golgi	85.48	81.66
EER93354	Sorghum	cytosol	84.54	81.12
EES04582	Sorghum	cytosol	84.07	80.49
EER90205	Sorghum	cytosol	82.9	79.37
EER93713	Sorghum	cytosol	82.44	79.1
Zm00001d010275_P001	Maize	cytosol	49.41	70.81
HORVU1Hr1G064870.3	Barley	mitochondrion	86.18	70.1
KXG37668	Sorghum	cytosol	37.7	35.7
KXG37669	Sorghum	cytosol	37.47	35.48
KXG36544	Sorghum	cytosol	36.77	34.89
EER93374	Sorghum	cytosol	36.77	34.89
EER92631	Sorghum	cytosol	36.07	34.38
EES19069	Sorghum	cytosol	32.08	29.21
OQU78051	Sorghum	cytosol	26.46	27.97

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	UniProt:A0A1Z5R3I3	InterPro:Beta-tubulin_BS
InterPro:Beta_tubulin	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525
InterPro:IPR037103	EnsemblPlants:OQU78011	ProteinID:OQU78011	ProteinID:OQU78011.1	PFAM:PF00091	PFAM:PF03953
PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF249
SMART:SM00864	SMART:SM00865	EnsemblPlantsGene:SORBI_3009G137600	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C
InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS
InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000B8BA211	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:49442132..49447934

Molecular Weight (calculated)

47846.0 Da

IEP (calculated)

4.982

GRAVY (calculated)

-0.241

Length

427 amino acids

Sequence
(BLAST)

001: MREILQIQGG QCGNQIGSKF WEVRYVGTTD VQLERVNVVY YNEASCGRFV PRAVLMDRTS SPAPWTRAVR SGPYGNIFRP ENFVFGQSGA GNNWAKGAEL
101: IDSVLDVVRK EAESCDCLQG FEVCHSLGGG TGSGLGTLLI SKIREEYADQ MMLTFSVFPS PKVSDTVLVE NADECMVLDN EALYDICFRT LKLTTPSFGD
201: LNHLINATMI GVTCCLRFPG QLNSDLRKLA VNLIPFPRLH FFMVSFAPLT SRGSQQYRSL KVPDLTCHDL SHRPQMWACK NMMCAADPCH GRYLTASTMF
301: RGKMSTKEVE EQMLSVQSKG SSCFVEWILN NVKSSVCDIP PRGLTMASTF VGSSTSIQEM FRRVSHPFTA MFRRKAFLHW YTCEGMDEME FTEAESNMND
401: LVSEYQQYQD ATADEEAGYE DENAGEE

Best Arabidopsis Sequence Match ( AT2G29550.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVNLEHGI DQTGRYVGDS ELQLERVNVY YNEASCGRYV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLSTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRNLTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGEYEEEE AEYEQEETY

Arabidopsis Description

TUBB7Tubulin beta-7 chain [Source:UniProtKB/Swiss-Prot;Acc:P29515]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.