Factsheet for HORVU1Hr1G064870.3

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G258800.1	Wheat	cytosol	84.57	99.78
TraesCS1B01G269400.1	Wheat	cytosol	84.57	99.78
TraesCS1A01G258800.1	Wheat	golgi	84.38	99.55
HORVU1Hr1G068170.1	Barley	cytosol	83.05	97.54
HORVU0Hr1G026030.2	Barley	cytosol	83.05	97.54
HORVU6Hr1G027620.1	Barley	plasma membrane	80.0	94.17
HORVU7Hr1G107100.2	Barley	cytosol, nucleus	79.05	93.05
HORVU3Hr1G078940.1	Barley	mitochondrion	84.38	88.07
OQU78011	Sorghum	cytosol	70.1	86.18
Zm00001d010275_P001	Maize	cytosol	48.57	85.57
HORVU5Hr1G100900.2	Barley	cytosol	81.52	84.58
HORVU4Hr1G002530.2	Barley	cytosol	77.71	82.93
HORVU4Hr1G087740.1	Barley	cytosol	62.48	69.94
HORVU2Hr1G037560.2	Barley	cytosol	29.9	43.01
HORVU4Hr1G009520.1	Barley	cytosol, plasma membrane	36.38	42.35
HORVU1Hr1G081280.1	Barley	cytosol	36.0	41.91
HORVU4Hr1G067370.1	Barley	cytosol	34.67	40.53
HORVU5Hr1G098960.2	Barley	cytosol, mitochondrion	36.38	38.35
HORVU2Hr1G037550.2	Barley	cytosol	32.95	38.27
HORVU2Hr1G037570.3	Barley	cytosol	31.05	36.71
HORVU1Hr1G023030.2	Barley	cytosol	29.71	33.26

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	UniProt:A0A287FZI3	EMBL:AM502852
EMBL:AM502854	InterPro:Beta_tubulin	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010
GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	EnsemblPlantsGene:HORVU1Hr1G064870
EnsemblPlants:HORVU1Hr1G064870.3	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	PFAM:PF00091	PFAM:PF03953
PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227	PANTHER:PTHR11588	PANTHER:PTHR11588:SF106	SMART:SM00864
SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom
InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000B47C235
SEG:seg	:	:	:	:	:

Description

Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A287FZI3]

Coordinates

chrchr1H:-:463490457..463493377

Molecular Weight (calculated)

59252.4 Da

IEP (calculated)

5.880

GRAVY (calculated)

-0.466

Length

525 amino acids

Sequence
(BLAST)

001: RQRERSRPIL LIGRRSASAV RSGALAPRAA IKIPPPFWPH QEHTRSPFPP HPTPPHPNPH PLSLPHARRE RCSPLRREAK MREILHIQGG QCGNQIGSKF
101: WEVVCDEHGI DPTGRYVGTS DLQLERVNVY YNEASCGRFV PRAVLMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN WAKGHYTEGA ELIDSVLDVV
201: RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM VLDNEALYDI CFRTLKLTTP
301: SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQM YRSLTVPELT QQMWDSKNMM CAADPRHGRY LTASAMFRGK
401: MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIPPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG EGMDEMEFTE AESNMNDLVS
501: EYQQYQDATA DEEGEYEEED ELEQE

Best Arabidopsis Sequence Match ( AT5G12250.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVCDEHGI DPTGRYVGNS DLQLERVNVY YNEASCGRYV PRAILMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIAPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEGEYEEDE DEEEILDHE

Arabidopsis Description

TUBB6Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UPR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.