Factsheet for HORVU2Hr1G037570.3

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35856	Canola	cytosol	31.76	94.63
TraesCS2D01G202200.1	Wheat	cytosol	88.06	86.89
TraesCS2B01G221800.1	Wheat	cytosol	88.06	86.89
TraesCS2A01G185500.2	Wheat	cytosol	88.06	86.89
Zm00001d021891_P001	Maize	cytosol	87.84	86.67
Zm00001d006651_P005	Maize	plasma membrane	87.84	86.67
KXG36544	Sorghum	cytosol	87.84	86.67
Os07t0574800-02	Rice	plasma membrane	87.39	86.22
VIT_06s0004g00480.t01	Wine grape	cytosol	86.71	85.75
HORVU2Hr1G037560.2	Barley	cytosol	70.27	85.48
PGSC0003DMT400010906	Potato	cytosol	86.26	85.3
GSMUA_Achr5P14830_001	Banana	cytosol	81.98	84.85
GSMUA_Achr7P01800_001	Banana	cytosol	76.8	84.2
HORVU2Hr1G037550.2	Barley	cytosol	84.68	83.19
HORVU4Hr1G009520.1	Barley	cytosol, plasma membrane	84.01	82.71
HORVU1Hr1G081280.1	Barley	cytosol	83.11	81.82
HORVU4Hr1G067370.1	Barley	cytosol	81.98	81.07
HORVU5Hr1G098960.2	Barley	cytosol, mitochondrion	83.33	74.3
HORVU6Hr1G027620.1	Barley	plasma membrane	37.39	37.22
HORVU7Hr1G107100.2	Barley	cytosol, nucleus	37.16	37.0
HORVU1Hr1G068170.1	Barley	cytosol	36.94	36.69
HORVU0Hr1G026030.2	Barley	cytosol	36.94	36.69
HORVU4Hr1G002530.2	Barley	cytosol	36.04	32.52
HORVU3Hr1G078940.1	Barley	mitochondrion	36.49	32.21
HORVU5Hr1G100900.2	Barley	cytosol	36.49	32.02
HORVU1Hr1G064870.3	Barley	mitochondrion	36.71	31.05
HORVU4Hr1G087740.1	Barley	cytosol	32.43	30.7
HORVU1Hr1G023030.2	Barley	cytosol	26.8	25.37

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	UniProt:A0A287HQL1	InterPro:Alpha_tubulin
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198
GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	EnsemblPlantsGene:HORVU2Hr1G037570	EnsemblPlants:HORVU2Hr1G037570.3	InterPro:IPR023123
InterPro:IPR036525	InterPro:IPR037103	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01162
ScanProsite:PS00227	PANTHER:PTHR11588	PANTHER:PTHR11588:SF48	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490
SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf
InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000B47BEDA	SEG:seg	:

Description

Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A287HQL1]

Coordinates

chrchr2H:+:172753150..172756006

Molecular Weight (calculated)

47675.6 Da

IEP (calculated)

5.302

GRAVY (calculated)

-0.188

Length

444 amino acids

Sequence
(BLAST)

001: XXXXXXXXXX XAGIQVGNAC WELYCLEHGI NQDGTMPRYI LTPRLGLHTM RSTRSSVRPV RASTCRGPSS STLSPLSSMS FHPEQLISGK EDAANNFARG
101: HYTVGKEIVD LCLDRVRKLA DNCTGLQGFL VFNAVGGGTG SGLGSLLLER LSVDYGKKSK LGFTIYPSPQ VSTAVVEPYN SVLSTHSLLE HTDVAVLLDN
201: EAIYDICRRS LDIERPTYTN LNRLISQIIS SLTTSLRFDG AINVDVTEFQ TNLVPYPRIH FMLSSYAPVI SAEKAYHEQL SVPEITNAVF EPSSMMAKCD
301: PRHGKYMACC LMYRGDVVPK DVNAAVATIK TKRTVQFVDW CPTGFKCGIN YQPPSVVPGG DLAKVQRAVC MISNNTAVAE VFSRIDHKFD LMYAKRAFVH
401: WYVGEGMEEG EFSEAREDLA ALEKDYEEVG AEGADDEGDE GDDY

Best Arabidopsis Sequence Match ( AT1G04820.1 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLSIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA4Tubulin alpha-2 chain [Source:UniProtKB/Swiss-Prot;Acc:B9DGT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.