Factsheet for Zm00001d006651_P005

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 18521681
extracellular: 20408568
plastid: 22065420
plasma membrane: 23353019
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 23353019 doi

D Hopff, S Wienkoop, S Lüthje

University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 18521681 doi

P Carletti, A Masi, B Spolaore, P Polverino De Laureto, M De Zorzi, L Turetta, M Ferretti, S Nardi

Department of Agricultural Biotechnology, University of Padua, Agripolis, Strada Romea, 16-35020 Legnaro, Padova, Italy.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG36544	Sorghum	cytosol	99.56	99.56
Zm00001d021891_P001	Maize	cytosol	99.56	99.56
TraesCS2A01G185500.2	Wheat	cytosol	98.67	98.67
TraesCS2B01G221800.1	Wheat	cytosol	98.67	98.67
TraesCS2D01G202200.1	Wheat	cytosol	98.67	98.67
Os07t0574800-02	Rice	plasma membrane	98.44	98.44
GSMUA_Achr5P14830_001	Banana	cytosol	92.67	97.2
GSMUA_Achr7P01800_001	Banana	cytosol	87.11	96.79
CDY35856	Canola	cytosol	32.0	96.64
VIT_06s0004g00480.t01	Wine grape	cytosol	96.22	96.44
PGSC0003DMT400010906	Potato	cytosol	95.78	95.99
Zm00001d013367_P001	Maize	plastid	91.78	91.57
Zm00001d033850_P003	Maize	cytosol	91.11	90.91
Zm00001d048065_P002	Maize	cytosol, mitochondrion	90.44	90.85
HORVU2Hr1G037550.2	Barley	cytosol	91.11	90.71
HORVU2Hr1G037570.3	Barley	cytosol	86.67	87.84
Zm00001d013159_P001	Maize	cytosol	87.33	87.33
Zm00001d040509_P001	Maize	cytosol	24.22	49.1
Zm00001d036626_P001	Maize	cytosol	24.0	47.58
Zm00001d046996_P001	Maize	cytosol	24.22	47.19
Zm00001d008216_P002	Maize	cytosol	24.22	45.61
Zm00001d034022_P001	Maize	cytosol	26.0	44.66
Zm00001d013139_P001	Maize	cytosol	28.67	44.03
Zm00001d015348_P002	Maize	plastid	42.67	43.24
Zm00001d012556_P001	Maize	plastid	41.33	41.52
Zm00001d027295_P002	Maize	plasma membrane	41.11	41.48
Zm00001d010275_P001	Maize	cytosol	27.33	41.28
Zm00001d033457_P001	Maize	plasma membrane	40.44	40.9
Zm00001d013612_P002	Maize	plasma membrane	40.22	40.49
Zm00001d043158_P001	Maize	plasma membrane	41.33	37.5
Zm00001d037582_P001	Maize	cytosol, extracellular	30.22	29.0
Zm00001d009780_P003	Maize	cytosol	30.67	27.27
Zm00001d035567_P001	Maize	nucleus	12.89	23.2
Zm00001d013636_P001	Maize	nucleus, plastid	13.33	22.9
Zm00001d026623_P001	Maize	cytosol, plastid	20.89	22.65

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	EntrezGene:542248	InterPro:Alpha_tubulin
InterPro:Beta-tubulin_BS	ProteinID:CAD20822.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010
GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123
InterPro:IPR036525	InterPro:IPR037103	EMBL:L27815	ProteinID:ONM24655.1	ProteinID:ONM24659.1	PFAM:PF00091
PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01162	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588
PANTHER:PTHR11588:SF48	UniProt:Q02245	UniProt:Q546I4	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490
SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf
InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	EMBL:U05258	UniParc:UPI0000001032	EMBL:X63177
EnsemblPlantsGene:Zm00001d006651	EnsemblPlants:Zm00001d006651_P005	EnsemblPlants:Zm00001d006651_T005	SEG:seg	:	:

Description

alpha tubulin5Tubulin alpha-5 chain

Coordinates

chr2:+:213473962..213477743

Molecular Weight (calculated)

49627.7 Da

IEP (calculated)

4.728

GRAVY (calculated)

-0.165

Length

450 amino acids

Sequence
(BLAST)

001: MREIISIHIG QAGIQVGNAC WELYCLEHGI EHDGTMPSDS SVGVAHDAFN TFFSETGSGK HVPRAIFVDL EPTVIDEVRT GSYRQLFHPE QLISGKEDAA
101: NNFARGHYTV GKEIVDLCLD RVRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL ISQIISSLTT SLRFDGAINV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AYHEQLSVPE ITNAVFEPSS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVATIKTKRT VQFVDWCPTG FKCGINYQPP SVVPGGDLAK VQRAVCMISN NTAVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGA DDEGDEGDDY

Best Arabidopsis Sequence Match ( AT5G19770.1 )
(BLAST)

001: MREIISIHIG QAGIQVGNSC WELYCLEHGI QPDGMMPSDT TVGVAHDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTV GKEIVDLCLD RVRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL ISQIISSLTT SLRFDGAINV DITEFQTNLV PYPRIHFMLS SYAPVISAAK AYHEQLSVPE ITNAVFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT VQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN NTAVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEEDEGEDY

Arabidopsis Description

TUBA3Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A178UTQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.