Factsheet for Zm00001d027295_P002

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 5
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18521681
plastid: 23198870
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 18521681 doi

P Carletti, A Masi, B Spolaore, P Polverino De Laureto, M De Zorzi, L Turetta, M Ferretti, S Nardi

Department of Agricultural Biotechnology, University of Padua, Agripolis, Strada Romea, 16-35020 Legnaro, Padova, Italy.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95686	Sorghum	cytosol	100.0	100.0
Os03t0105600-01	Rice	plasma membrane	99.1	98.88
TraesCS5A01G534300.1	Wheat	cytosol	98.43	98.21
TraesCSU01G137900.1	Wheat	cytosol	98.43	97.99
TraesCS4B01G366500.1	Wheat	cytosol	97.98	97.33
GSMUA_Achr4P11980_001	Banana	plasma membrane	97.31	97.31
PGSC0003DMT400078206	Potato	cytosol	96.64	96.64
PGSC0003DMT400053750	Potato	cytosol	96.19	96.4
Zm00001d040509_P001	Maize	cytosol	47.98	96.4
Zm00001d012556_P001	Maize	plastid	95.52	95.09
Zm00001d013139_P001	Maize	cytosol	62.33	94.88
Solyc06g076640.2.1	Tomato	nucleus	95.96	94.69
Zm00001d015348_P002	Maize	plastid	93.95	94.37
Zm00001d036626_P001	Maize	cytosol	47.98	94.27
Zm00001d034022_P001	Maize	cytosol	55.16	93.89
Zm00001d046996_P001	Maize	cytosol	47.98	92.64
Zm00001d008216_P002	Maize	cytosol	49.1	91.63
Zm00001d013612_P002	Maize	plasma membrane	91.48	91.28
Zm00001d033457_P001	Maize	plasma membrane	91.03	91.24
Solyc06g005910.2.1	Tomato	cytosol, nucleus, unclear	95.96	89.54
Zm00001d043158_P001	Maize	plasma membrane	95.52	85.89
Zm00001d010275_P001	Maize	cytosol	55.38	82.89
Zm00001d026623_P001	Maize	cytosol, plastid	47.53	51.08
Zm00001d013367_P001	Maize	plastid	42.83	42.35
Zm00001d033850_P003	Maize	cytosol	42.83	42.35
Zm00001d021891_P001	Maize	cytosol	41.48	41.11
Zm00001d006651_P005	Maize	plasma membrane	41.48	41.11
Zm00001d013159_P001	Maize	cytosol	41.26	40.89
Zm00001d048065_P002	Maize	cytosol, mitochondrion	41.03	40.85
Zm00001d037582_P001	Maize	cytosol, extracellular	34.98	33.26
Zm00001d009780_P003	Maize	cytosol	34.98	30.83
Zm00001d035567_P001	Maize	nucleus	15.25	27.2
Zm00001d013636_P001	Maize	nucleus, plastid	15.25	25.95

Protein Annotations

Gene3D:1.10.287.600	EntrezGene:100273658	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	UniProt:A0A096SSY4
InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010
GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123
InterPro:IPR036525	InterPro:IPR037103	ProteinID:ONL92621.1	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161
PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF264	SMART:SM00864
SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom
InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0001A8332E
EnsemblPlantsGene:Zm00001d027295	EnsemblPlants:Zm00001d027295_P002	EnsemblPlants:Zm00001d027295_T002	SEG:seg	:	:

Description

beta tubulin1 beta tubulin1

Coordinates

chr1:+:2104761..2106624

Molecular Weight (calculated)

50014.1 Da

IEP (calculated)

4.515

GRAVY (calculated)

-0.354

Length

446 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DATGRYGGDS DLQLERVNVY YNEASCGRFV PRAVLMDLEP GTMDSVRSGP YGHIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGEYEDEE EGDLQD

Best Arabidopsis Sequence Match ( AT5G62700.1 )
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DPTGRYTGDS DLQLERINVY YNEASCGRFV PRAVLMDLEP GTMDSLRSGP YGQTFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRSLTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGDYEDEE EGEYQQEEEY

Arabidopsis Description

TUBB3Tubulin beta-2 chain [Source:UniProtKB/Swiss-Prot;Acc:Q56YW9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.