Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d013636_P001 | Maize | nucleus, plastid | 83.2 | 79.39 |
| Zm00001d037582_P001 | Maize | cytosol, extracellular | 89.6 | 47.76 |
| VIT_15s0046g01350.t01 | Wine grape | cytosol | 86.4 | 45.57 |
| KRG97131 | Soybean | cytosol | 84.8 | 44.73 |
| KRH68880 | Soybean | endoplasmic reticulum | 84.8 | 44.73 |
| Bra007622.1-P | Field mustard | cytosol | 84.4 | 44.61 |
| CDX71723 | Canola | cytosol | 84.4 | 44.61 |
| CDY11370 | Canola | cytosol | 84.4 | 44.61 |
| AT3G61650.1 | Thale cress | cytosol | 84.4 | 44.51 |
| AT5G05620.1 | Thale cress | cytosol | 84.4 | 44.51 |
| Solyc03g111380.2.1 | Tomato | cytosol | 84.0 | 44.3 |
| PGSC0003DMT400039263 | Potato | cytosol | 84.0 | 44.3 |
| Zm00001d009780_P003 | Maize | cytosol | 88.8 | 43.87 |
| Zm00001d033457_P001 | Maize | plasma membrane | 28.0 | 15.73 |
| Zm00001d015348_P002 | Maize | plastid | 27.6 | 15.54 |
| Zm00001d013612_P002 | Maize | plasma membrane | 27.6 | 15.44 |
| Zm00001d027295_P002 | Maize | plasma membrane | 27.2 | 15.25 |
| Zm00001d012556_P001 | Maize | plastid | 27.2 | 15.18 |
| Zm00001d043158_P001 | Maize | plasma membrane | 27.2 | 13.71 |
| Zm00001d048065_P002 | Maize | cytosol, mitochondrion | 24.4 | 13.62 |
| Zm00001d013367_P001 | Maize | plastid | 24.0 | 13.3 |
| Zm00001d033850_P003 | Maize | cytosol | 23.6 | 13.08 |
| Zm00001d021891_P001 | Maize | cytosol | 23.2 | 12.89 |
| Zm00001d013159_P001 | Maize | cytosol | 23.2 | 12.89 |
| Zm00001d006651_P005 | Maize | plasma membrane | 23.2 | 12.89 |
| Zm00001d036626_P001 | Maize | cytosol | 10.0 | 11.01 |
| Zm00001d026623_P001 | Maize | cytosol, plastid | 18.0 | 10.84 |
| Zm00001d046996_P001 | Maize | cytosol | 9.6 | 10.39 |
| Zm00001d040509_P001 | Maize | cytosol | 8.8 | 9.91 |
| Zm00001d008216_P002 | Maize | cytosol | 8.8 | 9.21 |
| Zm00001d013139_P001 | Maize | cytosol | 10.4 | 8.87 |
| Zm00001d010275_P001 | Maize | cytosol | 9.2 | 7.72 |
| Zm00001d034022_P001 | Maize | cytosol | 7.6 | 7.25 |
Protein Annotations
| Gene3D:3.30.1330.20 | Gene3D:3.40.50.1440 | MapMan:35.1 | UniProt:A0A1D6LHB5 | ProteinID:AQK79278.1 | GO:GO:0000930 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005856 | GO:GO:0005874 | GO:GO:0007017 | GO:GO:0007020 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0031122 | InterPro:Gamma_tubulin | InterPro:IPR036525 |
| InterPro:IPR037103 | PFAM:PF00091 | PFAM:PF03953 | PRINTS:PR01161 | PRINTS:PR01164 | PANTHER:PTHR11588 |
| PANTHER:PTHR11588:SF7 | SMART:SM00865 | SUPFAM:SSF52490 | SUPFAM:SSF55307 | InterPro:Tub_FtsZ_C | InterPro:Tubulin |
| InterPro:Tubulin/FtsZ_2-layer-sand-dom | InterPro:Tubulin/FtsZ_C_sf | InterPro:Tubulin/FtsZ_GTPase_sf | InterPro:Tubulin_FtsZ_GTPase | UniParc:UPI0008444B0E | EnsemblPlantsGene:Zm00001d035567 |
| EnsemblPlants:Zm00001d035567_P001 | EnsemblPlants:Zm00001d035567_T001 | : | : | : | : |
Description
Tubulin gamma-2 chain
Coordinates
chr6:+:33951007..33954056
Molecular Weight (calculated)
28146.4 Da
IEP (calculated)
10.754
GRAVY (calculated)
-0.223
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPAGGQQQP MKRPRPTEFS GRRVVVQPYN SLLTLKRLTL NADCVVVLDN TTLNSIAVEH LHLSNPTFAQ TNSLVSTVIS ASTTTLRYPG YMNNDLVGLL
101: ASLIPTPRCH FLMTGYTPLT VERQVNMIHK TTVLDVMRRL LQTKNVMVSS YARTKEASQA KYISILNIIQ GEVDPTQVHE SLQRIRERKL VNFINWAPAS
201: IQVALSRKSP YVQTTHRVSG MKLANHTSIR HLFGKCLGQY EKLRKKTDFS
101: ASLIPTPRCH FLMTGYTPLT VERQVNMIHK TTVLDVMRRL LQTKNVMVSS YARTKEASQA KYISILNIIQ GEVDPTQVHE SLQRIRERKL VNFINWAPAS
201: IQVALSRKSP YVQTTHRVSG MKLANHTSIR HLFGKCLGQY EKLRKKTDFS
001: MPREIITLQV GQCGNQIGME FWKQLCLEHG ISKDGILEDF ATQGGDRKDV FFYQADDQHY IPRALLIDLE PRVINGIQNG DYRNLYNHEN IFVADHGGGA
101: GNNWASGYHQ GKGVEEEIMD MIDREADGSD SLEGFVLCHS IAGGTGSGMG SYLLETLNDR YSKKLVQTYS VFPNQMETSD VVVQPYNSLL TLKRLTLNAD
201: CVVVLDNTAL GRIAVERLHL TNPTFAQTNS LVSTVMSAST TTLRYPGYMN NDLVGLLASL IPTPRCHFLM TGYTPLTVER QANVIRKTTV LDVMRRLLQT
301: KNIMVSSYAR NKEASQAKYI SILNIIQGEV DPTQVHESLQ RIRERKLVNF IEWGPASIQV ALSKKSPYVQ TAHRVSGLML ASHTSIRHLF SKCLSQYDKL
401: RKKQAFLDNY RKFPMFADND LSEFDESRDI IESLVDEYKA CESPDYIKWG MEDPEQLMTG EGNASGVVDP KLAF
101: GNNWASGYHQ GKGVEEEIMD MIDREADGSD SLEGFVLCHS IAGGTGSGMG SYLLETLNDR YSKKLVQTYS VFPNQMETSD VVVQPYNSLL TLKRLTLNAD
201: CVVVLDNTAL GRIAVERLHL TNPTFAQTNS LVSTVMSAST TTLRYPGYMN NDLVGLLASL IPTPRCHFLM TGYTPLTVER QANVIRKTTV LDVMRRLLQT
301: KNIMVSSYAR NKEASQAKYI SILNIIQGEV DPTQVHESLQ RIRERKLVNF IEWGPASIQV ALSKKSPYVQ TAHRVSGLML ASHTSIRHLF SKCLSQYDKL
401: RKKQAFLDNY RKFPMFADND LSEFDESRDI IESLVDEYKA CESPDYIKWG MEDPEQLMTG EGNASGVVDP KLAF
Arabidopsis Description
TUBG1Tubulin gamma-1 chain [Source:UniProtKB/Swiss-Prot;Acc:P38557]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.