Factsheet for Zm00001d013612_P002

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 20408568
plasma membrane: 23353019
plasma membrane: 23508561
plasma membrane: 27341663

msms PMID: 23353019 doi

D Hopff, S Wienkoop, S Lüthje

University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	2.68	100.0
EER93713	Sorghum	cytosol	98.21	98.65
Zm00001d033457_P001	Maize	plasma membrane	97.76	98.2
Os03t0661300-01	Rice	plasma membrane	93.51	93.72
TraesCS4D01G015400.1	Wheat	cytosol	93.29	93.71
TraesCS4A01G296600.1	Wheat	cytosol	92.84	93.26
TraesCS4B01G017100.1	Wheat	cytosol	92.84	93.26
Zm00001d015348_P002	Maize	plastid	92.17	92.79
Zm00001d012556_P001	Maize	plastid	91.95	91.74
Zm00001d027295_P002	Maize	plasma membrane	91.28	91.48
Zm00001d036626_P001	Maize	cytosol	46.31	91.19
Zm00001d013139_P001	Maize	cytosol	59.51	90.78
CDX68422	Canola	cytosol	58.17	90.59
Zm00001d040509_P001	Maize	cytosol	44.97	90.54
VIT_02s0025g03540.t01	Wine grape	cytosol	89.26	89.86
Zm00001d034022_P001	Maize	cytosol	52.57	89.69
Zm00001d046996_P001	Maize	cytosol	46.31	89.61
KRH41169	Soybean	cytosol	89.04	89.44
KRH59870	Soybean	endoplasmic reticulum	88.81	89.01
Zm00001d008216_P002	Maize	cytosol	46.09	86.19
HORVU4Hr1G002530.2	Barley	cytosol	93.06	84.55
Zm00001d043158_P001	Maize	plasma membrane	91.28	82.26
Zm00001d010275_P001	Maize	cytosol	52.57	78.86
Zm00001d026623_P001	Maize	cytosol, plastid	46.98	50.6
Zm00001d021891_P001	Maize	cytosol	40.49	40.22
Zm00001d006651_P005	Maize	plasma membrane	40.49	40.22
Zm00001d013367_P001	Maize	plastid	40.49	40.13
Zm00001d033850_P003	Maize	cytosol	40.49	40.13
Zm00001d048065_P002	Maize	cytosol, mitochondrion	39.37	39.29
Zm00001d013159_P001	Maize	cytosol	39.37	39.11
Zm00001d037582_P001	Maize	cytosol, extracellular	33.78	32.2
Zm00001d009780_P003	Maize	cytosol	33.78	29.84
Zm00001d035567_P001	Maize	nucleus	15.44	27.6
Zm00001d013636_P001	Maize	nucleus, plastid	15.44	26.34

Protein Annotations

Gene3D:1.10.287.600	EntrezGene:100381283	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	ProteinID:AQK63995.1
ProteinID:AQK63999.1	UniProt:B4F946	EMBL:BT033634	EMBL:BT043221	InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198
GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103
PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228
PANTHER:PTHR11588	PANTHER:PTHR11588:SF246	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307
InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C
InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000016E036	EnsemblPlantsGene:Zm00001d013612	EnsemblPlants:Zm00001d013612_P002	EnsemblPlants:Zm00001d013612_T002
SEG:seg	:	:	:	:	:

Description

beta tubulin4Tubulin beta-4 chain

Coordinates

chr5:-:15364344..15368220

Molecular Weight (calculated)

50119.3 Da

IEP (calculated)

4.592

GRAVY (calculated)

-0.350

Length

447 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVICGEHCV DSTGRYSGTS SQQLELERIN VYYNEAGGGR YVPRAVLMDL EPGTMESIRA GPFGGIFRPD NFVYGQSGAG
101: NNWAKGHYTE GAELIDSVLD VVRKEAENCD CLQGFQVCHS LGGGTGSGMG TLLISKIREE YPDRMMLTFS VFPSPKVSDT VVEPYNATLS VHQLVENADE
201: CMVLDNEALY DICFRTLKLT NPSFGDLNHL ISATMSGVTC CLRFPGQLNS DLRKLAVNLI PFPRLHFFMV GFAPLTSRGS QQYRALTVPE LTQQMWDAKN
301: MMCAADPRHG RYLTASAMFR GKMSTKEVDE QMINVQNKNS SYFVEWIPNN VKSSVCDIPP VGLPMASTFV GNSTSIQEMF RRVSEQFTAM FRRKAFLHWY
401: TSEGMDEMEF TEAESNMNDL VAEYQQYQDA TAEEYEEEEH DGEEEHA

Best Arabidopsis Sequence Match ( AT1G75780.1 )
(BLAST)

001: MREILHVQGG QCGNQIGSKF WEVICDEHGV DPTGRYNGDS ADLQLERINV YYNEASGGRY VPRAVLMDLE PGTMDSIRSG PYGQIFRPDN FVFGQSGAGN
101: NWAKGHYTEG AELIDAVLDV VRKEAENCDC LQGFQVCHSL GGGTGSGMGT LLISKIREEY PDRMMLTFSV FPSPKVSDTV VEPYNATLSV HQLVENADEC
201: MVLDNEALYD ICFRTLKLST PSFGDLNHLI SATMSGVTCS LRFPGQLNSD LRKLAVNLIP FPRLHFFMVG FAPLTSRGSQ QYISLTVPEL TQQMWDAKNM
301: MCAADPRHGR YLTASAMFRG KMSTKEVDEQ ILNVQNKNSS YFVEWIPNNV KSSVCDIPPT GIKMASTFVG NSTSIQEMFR RVSEQFTAMF RRKAFLHWYT
401: GEGMDEMEFT EAESNMNDLV SEYQQYQDAT ADEEDEYDEE EEQVYES

Arabidopsis Description

TUBB1Tubulin beta-1 chain [Source:UniProtKB/Swiss-Prot;Acc:P12411]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.