CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	3.48	83.33
CDY38073	Canola	cytosol	95.82	61.11
CDX86102	Canola	plasma membrane	95.82	61.11
CDY00319	Canola	cytosol	95.82	61.11
CDX84345	Canola	cytosol	95.82	61.11
CDX97877	Canola	cytosol	95.12	60.8
CDY51360	Canola	cytosol	95.12	60.8
CDY53366	Canola	cytosol	95.12	60.8
CDY45452	Canola	cytosol	94.77	60.58
CDX80390	Canola	cytosol	93.38	59.69
CDX99087	Canola	cytosol	88.15	59.25
CDY21784	Canola	cytosol	88.15	59.25
CDX87664	Canola	cytosol	91.29	58.61
CDX73198	Canola	cytosol	91.29	58.61
CDX69693	Canola	cytosol	93.73	58.35
CDY31638	Canola	cytosol	90.24	58.33
EER93713	Sorghum	cytosol	90.24	58.2
Zm00001d013612_P002	Maize	plasma membrane	90.59	58.17
CDX94014	Canola	cytosol	90.24	58.07
CDX88051	Canola	cytosol	86.06	57.98
TraesCS4A01G296600.1	Wheat	cytosol	89.9	57.98
TraesCS4D01G015400.1	Wheat	cytosol	89.9	57.98
Zm00001d033457_P001	Maize	plasma membrane	89.9	57.98
CDY67078	Canola	cytosol	79.44	57.87
CDY31428	Canola	cytosol	89.9	57.85
CDX76444	Canola	cytosol	89.9	57.85
CDX84283	Canola	cytosol	89.9	57.85
CDX98679	Canola	cytosol	89.9	57.85
HORVU4Hr1G087740.1	Barley	cytosol	94.43	57.78
CDY60599	Canola	cytosol	89.55	57.75
TraesCS4B01G017100.1	Wheat	cytosol	89.55	57.75
CDX79013	Canola	cytosol	89.55	57.62
CDX82788	Canola	cytosol	89.55	57.62
CDY69221	Canola	cytosol	89.2	57.53
CDX96965	Canola	cytosol	89.2	57.53
CDY14924	Canola	cytosol	89.2	57.4
CDY13108	Canola	cytosol	88.85	57.3
CDY49002	Canola	cytosol	88.85	57.3
VIT_02s0025g03540.t01	Wine grape	cytosol	88.5	57.21
KRH41169	Soybean	cytosol	88.5	57.08
Os03t0661300-01	Rice	plasma membrane	88.15	56.73
KRH59870	Soybean	endoplasmic reticulum	87.46	56.28
CDX97180	Canola	cytosol	93.73	55.93
HORVU4Hr1G002530.2	Barley	cytosol	89.9	52.44
CDY35856	Canola	cytosol	17.42	33.56
CDY46272	Canola	cytosol	26.13	25.95
CDY50974	Canola	cytosol	38.68	24.67
CDY28123	Canola	cytosol	38.68	24.67
CDY03583	Canola	cytosol	38.68	24.67
CDY45043	Canola	cytosol	38.68	24.67
CDY66630	Canola	cytosol	36.93	24.37
CDX70890	Canola	cytosol	37.98	24.22
CDY42294	Canola	cytosol	37.98	24.22
CDY42295	Canola	cytosol	37.98	24.22
CDX88875	Canola	cytosol	37.98	24.22
CDY44941	Canola	cytosol	37.63	24.0
CDY44942	Canola	cytosol	37.63	24.0
CDX92502	Canola	cytosol	37.28	23.78
CDX92501	Canola	cytosol	37.28	23.78
CDY25017	Canola	cytosol	33.8	23.66
CDY29334	Canola	cytosol	34.49	22.97
CDY05559	Canola	mitochondrion	33.1	18.89
CDY11370	Canola	cytosol	31.01	18.82
CDX71723	Canola	cytosol	31.01	18.82

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	GO:A0A078BW42	InterPro:Beta_tubulin
EnsemblPlants:CDX68422	ProteinID:CDX68422	ProteinID:CDX68422.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005874	GO:GO:0007017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00125822001	InterPro:IPR023123	InterPro:IPR036525
InterPro:IPR037103	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01163	PANTHER:PTHR11588
PANTHER:PTHR11588:SF259	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin
InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0004EE1A35
SEG:seg	:	:	:	:	:

Description

BnaC01g25000D

Coordinates

chrLK031788:-:1053403..1055555

Molecular Weight (calculated)

32862.9 Da

IEP (calculated)

4.499

GRAVY (calculated)

-0.393

Length

287 amino acids

Sequence
(BLAST)

001: MMLTFSVFPS PKISDTVVEP YNATLSVHQL VENADECMVL DNKALYDICF RTLKLTTPSF GNLNHLISAT MSGVTCCLRF PGQLNSDLRK LAVNLIPFPR
101: LHFFMVGFAP LTSRGSQQYR SLTVPELTQQ MWDSKNMICA ADPRHGRYLT ASAMFRGKMS TKEVDEQMLN VQNKNSSYFV EWIPNNVKST VCDIPPTGLK
201: MASTFIGNST SIQEMFRRVS EQFTAMFRRK AFLHWYTGEG MDEMEFTEVE SNMNDVVSEY QQYQDATADE EGEYEDEEEG EYPQEEY

Best Arabidopsis Sequence Match ( AT2G29550.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVNLEHGI DQTGRYVGDS ELQLERVNVY YNEASCGRYV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLSTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRNLTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGEYEEEE AEYEQEETY

Arabidopsis Description

TUBB7Tubulin beta-7 chain [Source:UniProtKB/Swiss-Prot;Acc:P29515]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.