Factsheet for Zm00001d033457_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

plasma membrane: 23353019

msms PMID: 23353019 doi

D Hopff, S Wienkoop, S Lüthje

University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	2.7	100.0
EER93713	Sorghum	cytosol	99.1	99.1
Zm00001d013612_P002	Maize	plasma membrane	98.2	97.76
Os03t0661300-01	Rice	plasma membrane	94.38	94.17
TraesCS4D01G015400.1	Wheat	cytosol	93.93	93.93
TraesCS4A01G296600.1	Wheat	cytosol	93.93	93.93
TraesCS4B01G017100.1	Wheat	cytosol	93.71	93.71
Zm00001d015348_P002	Maize	plastid	92.58	92.79
Zm00001d036626_P001	Maize	cytosol	46.74	91.63
Zm00001d012556_P001	Maize	plastid	92.13	91.52
Zm00001d027295_P002	Maize	plasma membrane	91.24	91.03
Zm00001d013139_P001	Maize	cytosol	59.33	90.1
VIT_02s0025g03540.t01	Wine grape	cytosol	89.89	90.09
Zm00001d040509_P001	Maize	cytosol	44.94	90.09
Zm00001d046996_P001	Maize	cytosol	46.74	90.04
CDX68422	Canola	cytosol	57.98	89.9
KRH41169	Soybean	cytosol	89.89	89.89
KRH59870	Soybean	endoplasmic reticulum	89.89	89.69
Zm00001d034022_P001	Maize	cytosol	52.58	89.31
Zm00001d008216_P002	Maize	cytosol	46.07	85.77
HORVU4Hr1G002530.2	Barley	cytosol	93.93	84.96
Zm00001d043158_P001	Maize	plasma membrane	91.69	82.26
Zm00001d010275_P001	Maize	cytosol	52.58	78.52
Zm00001d026623_P001	Maize	cytosol, plastid	46.74	50.12
Zm00001d021891_P001	Maize	cytosol	40.9	40.44
Zm00001d006651_P005	Maize	plasma membrane	40.9	40.44
Zm00001d013367_P001	Maize	plastid	40.9	40.35
Zm00001d033850_P003	Maize	cytosol	40.45	39.91
Zm00001d013159_P001	Maize	cytosol	39.78	39.33
Zm00001d048065_P002	Maize	cytosol, mitochondrion	39.33	39.06
Zm00001d037582_P001	Maize	cytosol, extracellular	34.16	32.41
Zm00001d009780_P003	Maize	cytosol	34.16	30.04
Zm00001d035567_P001	Maize	nucleus	15.73	28.0
Zm00001d013636_P001	Maize	nucleus, plastid	15.96	27.1

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	UniProt:B6TF38	InterPro:Beta-tubulin_BS
InterPro:Beta_tubulin	ncoils:Coil	EMBL:EU963603	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010
GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123
InterPro:IPR036525	InterPro:IPR037103	ProteinID:ONM07638.1	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161
PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF246	SMART:SM00864
SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom
InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0000E6476D
EnsemblPlantsGene:Zm00001d033457	EnsemblPlants:Zm00001d033457_P001	EnsemblPlants:Zm00001d033457_T001	SEG:seg	:	:

Description

beta tubulin3Tubulin beta-3 chain

Coordinates

chr1:-:263191017..263194942

Molecular Weight (calculated)

49768.8 Da

IEP (calculated)

4.538

GRAVY (calculated)

-0.339

Length

445 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVICGEHGV DSTGCYSGVS PQQLERINVY YNEAGGGRYV PRAVLMDLEP GTMESIRAGP FGGIFRPDNF VYGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTNP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIPPVG LSMSSTFVGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTS
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATA EEYDEEEQDG EEEHA

Best Arabidopsis Sequence Match ( AT5G12250.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVCDEHGI DPTGRYVGNS DLQLERVNVY YNEASCGRYV PRAILMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIAPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEGEYEEDE DEEEILDHE

Arabidopsis Description

TUBB6Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UPR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.