Factsheet for Zm00001d021891_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG36544	Sorghum	cytosol	100.0	100.0
Zm00001d006651_P005	Maize	plasma membrane	99.56	99.56
Os07t0574800-02	Rice	plasma membrane	98.89	98.89
TraesCS2A01G185500.2	Wheat	cytosol	98.89	98.89
TraesCS2B01G221800.1	Wheat	cytosol	98.89	98.89
TraesCS2D01G202200.1	Wheat	cytosol	98.89	98.89
GSMUA_Achr5P14830_001	Banana	cytosol	93.11	97.67
VIT_06s0004g00480.t01	Wine grape	cytosol	96.67	96.88
GSMUA_Achr7P01800_001	Banana	cytosol	87.11	96.79
CDY35856	Canola	cytosol	32.0	96.64
PGSC0003DMT400010906	Potato	cytosol	96.22	96.44
Zm00001d013367_P001	Maize	plastid	91.78	91.57
Zm00001d048065_P002	Maize	cytosol, mitochondrion	90.89	91.29
HORVU2Hr1G037550.2	Barley	cytosol	91.33	90.93
Zm00001d033850_P003	Maize	cytosol	91.11	90.91
HORVU2Hr1G037570.3	Barley	cytosol	86.67	87.84
Zm00001d013159_P001	Maize	cytosol	87.56	87.56
Zm00001d040509_P001	Maize	cytosol	24.44	49.55
Zm00001d036626_P001	Maize	cytosol	23.78	47.14
Zm00001d046996_P001	Maize	cytosol	24.0	46.75
Zm00001d008216_P002	Maize	cytosol	24.44	46.03
Zm00001d034022_P001	Maize	cytosol	26.0	44.66
Zm00001d013139_P001	Maize	cytosol	28.67	44.03
Zm00001d015348_P002	Maize	plastid	42.44	43.02
Zm00001d010275_P001	Maize	cytosol	27.56	41.61
Zm00001d012556_P001	Maize	plastid	41.33	41.52
Zm00001d027295_P002	Maize	plasma membrane	41.11	41.48
Zm00001d033457_P001	Maize	plasma membrane	40.44	40.9
Zm00001d013612_P002	Maize	plasma membrane	40.22	40.49
Zm00001d043158_P001	Maize	plasma membrane	41.56	37.7
Zm00001d037582_P001	Maize	cytosol, extracellular	30.22	29.0
Zm00001d009780_P003	Maize	cytosol	30.67	27.27
Zm00001d035567_P001	Maize	nucleus	12.89	23.2
Zm00001d013636_P001	Maize	nucleus, plastid	13.33	22.9
Zm00001d026623_P001	Maize	cytosol, plastid	20.89	22.65

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	EntrezGene:542582	InterPro:Alpha_tubulin
EMBL:BT068904	InterPro:Beta-tubulin_BS	UniProt:C0PKT5	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874
GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	ProteinID:ONM58997.1	ProteinID:ONM58999.1	ProteinID:ONM59003.1
UniProt:P33627	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01162	ScanProsite:PS00227
ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF48	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490
SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf
InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000013698D	EMBL:X63178	EnsemblPlantsGene:Zm00001d021891
EnsemblPlants:Zm00001d021891_P001	EnsemblPlants:Zm00001d021891_T001	SEG:seg	:	:	:

Description

alpha tubulin6Tubulin alpha-6 chain

Coordinates

chr7:+:165505165..165508736

Molecular Weight (calculated)

49601.7 Da

IEP (calculated)

4.681

GRAVY (calculated)

-0.161

Length

450 amino acids

Sequence
(BLAST)

001: MREIISIHIG QAGIQVGNAC WELYCLEHGI EPDGTMPSDT SVGVAHDAFN TFFSETGSGK HVPRAIFVDL EPTVIDEVRT GSYRQLFHPE QLISGKEDAA
101: NNFARGHYTV GKEIVDLCLD RVRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL ISQIISSLTT SLRFDGAINV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AYHEQLSVPE ITNAVFEPSS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVATIKTKRT VQFVDWCPTG FKCGINYQPP SVVPGGDLAK VQRAVCMISN NTAVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGA DDEGDEGDDY

Best Arabidopsis Sequence Match ( AT5G19770.1 )
(BLAST)

001: MREIISIHIG QAGIQVGNSC WELYCLEHGI QPDGMMPSDT TVGVAHDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTV GKEIVDLCLD RVRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL ISQIISSLTT SLRFDGAINV DITEFQTNLV PYPRIHFMLS SYAPVISAAK AYHEQLSVPE ITNAVFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT VQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN NTAVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEEDEGEDY

Arabidopsis Description

TUBA3Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A178UTQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.