Factsheet for GSMUA_Achr7P01800_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P15410_001	Banana	cytosol	56.3	95.8
GSMUA_Achr5P14830_001	Banana	cytosol	98.77	93.24
GSMUA_Achr6P29670_001	Banana	cytosol	49.38	90.09
GSMUA_Achr2P12390_001	Banana	cytosol, plasma membrane	97.04	87.33
Zm00001d021891_P001	Maize	cytosol	96.79	87.11
Zm00001d006651_P005	Maize	plasma membrane	96.79	87.11
TraesCS2D01G202200.1	Wheat	cytosol	96.79	87.11
TraesCS2B01G221800.1	Wheat	cytosol	96.79	87.11
TraesCS2A01G185500.2	Wheat	cytosol	96.79	87.11
Os07t0574800-02	Rice	plasma membrane	96.79	87.11
KXG36544	Sorghum	cytosol	96.79	87.11
GSMUA_Achr7P17960_001	Banana	cytosol	83.46	85.14
GSMUA_Achr6P00620_001	Banana	cytosol	66.17	81.46
GSMUA_Achr2P17250_001	Banana	cytosol	65.43	80.55
HORVU2Hr1G037550.2	Barley	cytosol	89.14	79.87
GSMUA_Achr7P08080_001	Banana	cytosol	61.73	79.62
HORVU2Hr1G037570.3	Barley	cytosol	84.2	76.8
CDY35856	Canola	cytosol	27.9	75.84
GSMUA_Achr4P05450_001	Banana	cytosol	29.88	43.06
GSMUA_Achr8P33350_001	Banana	cytosol	29.88	40.07
GSMUA_Achr1P17290_001	Banana	cytosol	35.06	38.48
GSMUA_Achr3P23490_001	Banana	cytosol	35.06	38.07
GSMUA_Achr6P08450_001	Banana	cytosol	36.3	37.98
GSMUA_Achr6P04600_001	Banana	cytosol	39.51	37.83
GSMUA_Achr3P18460_001	Banana	cytosol	36.05	37.82
GSMUA_Achr10P...	Banana	cytosol	39.75	37.7
GSMUA_Achr2P01410_001	Banana	cytosol	36.05	37.44
GSMUA_Achr5P00290_001	Banana	cytosol	36.3	37.4
GSMUA_Achr8P07060_001	Banana	cytosol	35.8	37.28
GSMUA_Achr11P...	Banana	cytosol	32.1	37.14
GSMUA_Achr5P26680_001	Banana	cytosol	35.56	37.11
GSMUA_AchrUn_...	Banana	cytosol	33.33	37.09
GSMUA_Achr5P12310_001	Banana	cytosol	31.11	36.84
GSMUA_Achr6P16040_001	Banana	cytosol	35.56	36.83
GSMUA_Achr4P11980_001	Banana	plasma membrane	40.25	36.55
GSMUA_Achr6P19990_001	Banana	cytosol	36.79	35.99
GSMUA_Achr4P26250_001	Banana	cytosol	39.01	35.43
GSMUA_Achr5P10720_001	Banana	cytosol	32.35	34.84
GSMUA_Achr5P21740_001	Banana	cytosol	39.75	32.01
GSMUA_Achr1P14750_001	Banana	cytosol	32.1	27.2
GSMUA_Achr11P...	Banana	cytosol	0.0	0.0

Protein Annotations

MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Alpha_tubulin	InterPro:Beta-tubulin_BS	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856
GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr7G01800_001	EnsemblPlants:GSMUA_Achr7P01800_001	EnsemblPlants:GSMUA_Achr7T01800_001	InterPro:IPR036525	InterPro:IPR037103
UniProt:M0TDX0	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01162	ScanProsite:PS00227
ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF48	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490
SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf
InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000296C98C	SEG:seg	:	:

Description

Tubulin alpha-3 chain [Source:GMGC_GENE;Acc:GSMUA_Achr7G01800_001]

Coordinates

chr7:-:1400522..1403668

Molecular Weight (calculated)

44652.1 Da

IEP (calculated)

4.648

GRAVY (calculated)

-0.098

Length

405 amino acids

Sequence
(BLAST)

001: MREIISIHIG QAGIQVGNAC WELYCLEHGI QPDGIMPSDS SVGMACDAFN TFFSETGAGK HVPRAIFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTV GKEIVDLCLD RVRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL ISQIISSLTT SLRFDGAINV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AYHEQLSYMA CCLMYRGDVV
301: PKDVNAAVAT IKTKRTVQFV DWCPTGFKCG INYQPPTVVP GGDLAKVQRA VCMISNNTAV AEVFSRIDHK FDLMYAKQDL AALEKDYEEV GAEGADDEEE
401: EPEDY

Best Arabidopsis Sequence Match ( AT5G19770.1 )
(BLAST)

001: MREIISIHIG QAGIQVGNSC WELYCLEHGI QPDGMMPSDT TVGVAHDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTV GKEIVDLCLD RVRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL ISQIISSLTT SLRFDGAINV DITEFQTNLV PYPRIHFMLS SYAPVISAAK AYHEQLSVPE ITNAVFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT VQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN NTAVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEEDEGEDY

Arabidopsis Description

TUBA3Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A178UTQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.