Factsheet for GSMUA_Achr10P12620_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
extracellular 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P08450_001	Banana	cytosol	88.52	97.67
GSMUA_Achr6P16040_001	Banana	cytosol	89.23	97.44
GSMUA_Achr3P18460_001	Banana	cytosol	86.89	96.11
GSMUA_Achr11P...	Banana	cytosol	78.69	96.0
GSMUA_Achr3P23490_001	Banana	cytosol	82.9	94.91
GSMUA_Achr5P26680_001	Banana	cytosol	86.18	94.85
GSMUA_Achr8P07060_001	Banana	cytosol	86.18	94.6
GSMUA_Achr2P01410_001	Banana	cytosol	86.18	94.36
GSMUA_Achr5P00290_001	Banana	cytosol	86.42	93.89
GSMUA_Achr4P05450_001	Banana	cytosol	60.66	92.17
GSMUA_Achr11P...	Banana	cytosol	2.58	91.67
GSMUA_Achr6P04600_001	Banana	cytosol	89.46	90.31
GSMUA_Achr4P11980_001	Banana	plasma membrane	93.68	89.69
GSMUA_Achr1P17290_001	Banana	cytosol	77.05	89.16
GSMUA_AchrUn_...	Banana	cytosol	75.64	88.74
GSMUA_Achr4P26250_001	Banana	cytosol	90.63	86.77
GSMUA_Achr8P33350_001	Banana	cytosol	59.95	84.77
GSMUA_Achr5P12310_001	Banana	cytosol	67.68	84.5
GSMUA_Achr5P10720_001	Banana	cytosol	71.43	81.12
GSMUA_Achr5P21740_001	Banana	cytosol	94.85	80.52
GSMUA_Achr6P19990_001	Banana	cytosol	75.41	77.78
GSMUA_Achr8P15410_001	Banana	cytosol	25.76	46.22
GSMUA_Achr6P29670_001	Banana	cytosol	23.65	45.5
GSMUA_Achr7P17960_001	Banana	cytosol	38.88	41.81
GSMUA_Achr6P00620_001	Banana	cytosol	31.38	40.73
GSMUA_Achr7P08080_001	Banana	cytosol	29.74	40.45
GSMUA_Achr2P17250_001	Banana	cytosol	31.15	40.43
GSMUA_Achr5P14830_001	Banana	cytosol	40.28	40.09
GSMUA_Achr7P01800_001	Banana	cytosol	37.7	39.75
GSMUA_Achr2P12390_001	Banana	cytosol, plasma membrane	41.69	39.56
GSMUA_Achr1P14750_001	Banana	cytosol	35.6	31.8

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198
GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr10G12620_001	EnsemblPlants:GSMUA_Achr10P12620_001	EnsemblPlants:GSMUA_Achr10T12620_001
InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	UniProt:M0RHN8	PFAM:PF00091	PFAM:PF03953
PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF106
SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin
InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase
UniParc:UPI000295F057	SEG:seg	:	:	:	:

Description

Tubulin beta-2 chain [Source:GMGC_GENE;Acc:GSMUA_Achr10G12620_001]

Coordinates

chr10:+:21604252..21607342

Molecular Weight (calculated)

47878.5 Da

IEP (calculated)

4.349

GRAVY (calculated)

-0.379

Length

427 amino acids

Sequence
(BLAST)

001: MREILHVQGG QCGNQIGSKF WEVVCDEHGI DPTGRYTGSS DLQLERINVY YNEASCGRFV PRAVLMDLEP GTMDSIRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIPPRG LSMASTFIGN STSIQEMFRR GMDEMEFTEA ESNMNDLVSE
401: YQQYQDATAD EEDEYEEEEE EEAAQEI

Best Arabidopsis Sequence Match ( AT5G12250.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVCDEHGI DPTGRYVGNS DLQLERVNVY YNEASCGRYV PRAILMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIAPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEGEYEEDE DEEEILDHE

Arabidopsis Description

TUBB6Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UPR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.