Factsheet for GSMUA_Achr7P17960_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P15410_001	Banana	cytosol	53.65	89.5
VIT_03s0088g00380.t01	Wine grape	cytosol	96.98	85.56
TraesCS4D01G057000.1	Wheat	cytosol	96.98	85.37
TraesCS4B01G056700.1	Wheat	cytosol	96.98	85.37
TraesCS4A01G257800.1	Wheat	cytosol	96.98	85.37
HORVU4Hr1G009520.1	Barley	cytosol, plasma membrane	96.98	85.37
KXG37668	Sorghum	cytosol	96.73	85.14
Zm00001d013367_P001	Maize	plastid	96.47	84.92
KXG37669	Sorghum	cytosol	96.47	84.92
Zm00001d033850_P003	Maize	cytosol	96.22	84.7
Os11t0247300-01	Rice	plasma membrane	96.22	84.7
TraesCS1A01G350200.1	Wheat	golgi	96.22	84.7
TraesCS1B01G364500.3	Wheat	cytosol	96.22	84.7
TraesCS1D01G353100.5	Wheat	cytosol	96.22	84.7
GSMUA_Achr6P29670_001	Banana	cytosol	47.36	84.68
HORVU1Hr1G081280.1	Barley	cytosol	95.97	84.48
Os03t0726100-01	Rice	nucleus	95.72	84.26
KRH77187	Soybean	endoplasmic reticulum	95.47	84.04
KRH28301	Soybean	cytosol, endoplasmic reticulum	95.47	84.04
GSMUA_Achr5P14830_001	Banana	cytosol	90.43	83.68
GSMUA_Achr7P01800_001	Banana	cytosol	85.14	83.46
KRH58181	Soybean	nucleus	94.21	83.11
TraesCS5B01G412700.1	Wheat	cytosol	93.95	82.71
TraesCS5A01G407800.1	Wheat	golgi	93.95	82.71
GSMUA_Achr6P00620_001	Banana	cytosol	68.51	82.67
TraesCS5D01G417700.1	Wheat	cytosol	93.45	82.26
GSMUA_Achr2P17250_001	Banana	cytosol	68.01	82.07
GSMUA_Achr7P08080_001	Banana	cytosol	63.98	80.89
Zm00001d013159_P001	Maize	cytosol	90.68	80.0
GSMUA_Achr2P12390_001	Banana	cytosol, plasma membrane	90.68	80.0
EER93374	Sorghum	cytosol	90.18	79.56
HORVU5Hr1G098960.2	Barley	cytosol, mitochondrion	93.95	74.9
Solyc12g088180.1.1	Tomato	cytosol	39.8	69.6
Bra020572.1-P	Field mustard	cytosol	64.99	55.13
CDY46272	Canola	cytosol	39.04	53.63
CDY05559	Canola	mitochondrion	64.99	51.29
GSMUA_Achr4P05450_001	Banana	cytosol	31.49	44.48
GSMUA_Achr8P33350_001	Banana	cytosol	30.73	40.4
GSMUA_Achr3P18460_001	Banana	cytosol	38.54	39.64
GSMUA_Achr6P08450_001	Banana	cytosol	38.54	39.53
GSMUA_Achr3P23490_001	Banana	cytosol	36.78	39.14
GSMUA_Achr10P...	Banana	cytosol	41.81	38.88
GSMUA_Achr11P...	Banana	cytosol	34.01	38.57
GSMUA_Achr8P07060_001	Banana	cytosol	37.78	38.56
GSMUA_Achr2P01410_001	Banana	cytosol	37.78	38.46
GSMUA_Achr5P26680_001	Banana	cytosol	37.53	38.4
GSMUA_Achr6P04600_001	Banana	cytosol	40.55	38.06
GSMUA_AchrUn_...	Banana	cytosol	34.76	37.91
GSMUA_Achr5P00290_001	Banana	cytosol	37.28	37.66
GSMUA_Achr4P11980_001	Banana	plasma membrane	42.07	37.44
GSMUA_Achr6P16040_001	Banana	cytosol	36.78	37.34
GSMUA_Achr4P26250_001	Banana	cytosol	41.56	37.0
GSMUA_Achr1P17290_001	Banana	cytosol	33.75	36.31
GSMUA_Achr5P12310_001	Banana	cytosol	31.23	36.26
GSMUA_Achr6P19990_001	Banana	cytosol	36.78	35.27
GSMUA_Achr5P10720_001	Banana	cytosol	31.49	33.24
GSMUA_Achr5P21740_001	Banana	cytosol	40.81	32.21
GSMUA_Achr1P14750_001	Banana	cytosol	33.5	27.82
GSMUA_Achr11P...	Banana	cytosol	0.76	25.0

Protein Annotations

MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Alpha_tubulin	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874
GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
EnsemblPlantsGene:GSMUA_Achr7G17960_001	EnsemblPlants:GSMUA_Achr7P17960_001	EnsemblPlants:GSMUA_Achr7T17960_001	InterPro:IPR036525	InterPro:IPR037103	UniProt:M0TII3
PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01162	ScanProsite:PS00227	PANTHER:PTHR11588
PANTHER:PTHR11588:SF242	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C
InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase
UniParc:UPI000294DFFE	SEG:seg	:	:	:	:

Description

Tubulin alpha chain [Source:GMGC_GENE;Acc:GSMUA_Achr7G17960_001]

Coordinates

chr7:+:20794831..20796448

Molecular Weight (calculated)

43722.8 Da

IEP (calculated)

4.772

GRAVY (calculated)

-0.145

Length

397 amino acids

Sequence
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPGGK TVGGVDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GSYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFHA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL VISSLTASLR FDGALNVDVT EFQTNLVPYP RIHFMLSSYA PVISAEKAYH EQLSVAEITN SAFEPSSMMA
301: KCDPRHGKYM ACCLMYRGDV VPKDVNAAVA TIKTKRTIQF VQRAVCMISN STSVADVFSR IDHKFDLMED LAALEKDYEE VGAESAEGEE YDEADEY

Best Arabidopsis Sequence Match ( AT4G14960.2 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPGDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLNIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA6Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A178UXP7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.