Factsheet for HORVU5Hr1G098960.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G412700.1	Wheat	cytosol	90.36	99.78
TraesCS5A01G407800.1	Wheat	golgi	90.36	99.78
TraesCS5D01G417700.1	Wheat	cytosol	89.96	99.33
HORVU1Hr1G081280.1	Barley	cytosol	87.35	96.45
HORVU4Hr1G009520.1	Barley	cytosol, plasma membrane	86.75	95.79
KRH77187	Soybean	endoplasmic reticulum	85.74	94.68
KRH28301	Soybean	cytosol, endoplasmic reticulum	85.74	94.68
KRH58181	Soybean	nucleus	85.34	94.44
GSMUA_Achr7P17960_001	Banana	cytosol	74.9	93.95
EER93374	Sorghum	cytosol	83.53	92.44
Zm00001d013159_P001	Maize	cytosol	83.33	92.22
HORVU2Hr1G037560.2	Barley	cytosol	67.47	92.05
HORVU4Hr1G067370.1	Barley	cytosol	79.32	87.97
HORVU2Hr1G037550.2	Barley	cytosol	77.91	85.84
HORVU2Hr1G037570.3	Barley	cytosol	74.3	83.33
HORVU1Hr1G068170.1	Barley	cytosol	38.15	42.51
HORVU0Hr1G026030.2	Barley	cytosol	38.15	42.51
HORVU6Hr1G027620.1	Barley	plasma membrane	37.95	42.38
HORVU7Hr1G107100.2	Barley	cytosol, nucleus	37.55	41.93
HORVU4Hr1G002530.2	Barley	cytosol	38.15	38.62
HORVU3Hr1G078940.1	Barley	mitochondrion	38.35	37.97
HORVU5Hr1G100900.2	Barley	cytosol	38.15	37.55
HORVU1Hr1G064870.3	Barley	mitochondrion	38.35	36.38
HORVU4Hr1G087740.1	Barley	cytosol	30.12	31.98
HORVU1Hr1G023030.2	Barley	cytosol	28.31	30.06

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	UniProt:A0A287SGV9	InterPro:Alpha_tubulin
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198
GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	EnsemblPlantsGene:HORVU5Hr1G098960	EnsemblPlants:HORVU5Hr1G098960.2	InterPro:IPR023123
InterPro:IPR036525	InterPro:IPR037103	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01162
ScanProsite:PS00227	PANTHER:PTHR11588	PANTHER:PTHR11588:SF254	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490
SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf
InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000B4727F6	SEG:seg	:

Description

Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A287SGV9]

Coordinates

chrchr5H:-:609150171..609154223

Molecular Weight (calculated)

54683.5 Da

IEP (calculated)

4.880

GRAVY (calculated)

-0.289

Length

498 amino acids

Sequence
(BLAST)

001: RGRGGPAEEP LHIRRLHKRR LALAPSPSSS PPAPPPDPVE PSPAASKMRE CISIHIGQAG IQVGNACWEL YCLEHGIQPD GQTSGDKTIG GGDDAFNTFF
101: SETGAGKYVP RAVFVDLEPT VIDEVRTSAY RQLFHPEQLI SGKEDAANNF ARGHYTIGKE IVDLCLDRIR KLADNCTGLQ GFLVFNAVGG GTGSGLGSLL
201: LERLSVDYGK KSKLGFTVYP SPQVSTSVVE PYNSVLSTHS LLEHTDVSIL LDNEAIYDIC RRSLDIERPT YTNLNRLVSQ VISSLTTSLR FDGALNVDVT
301: EFQTNLVPYP RIHFMLSSYA PVISAEKAYH EQLSVSEITN SAFEPSSMMA KCDPRHGKYM ACCLMYRGDV VPKDVNAAVA TIKTKRTIQF VDWCPTGFKC
401: GINYQPPTVV PGGDLAKVQR AVCMISNSTS VVEVFSRIDH KFDLMYAKRA FVHWYVGEGM EEGEFSEARE DLAALEKDYE EVGAEGGDDE DGEEDDDY

Best Arabidopsis Sequence Match ( AT1G04820.1 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLSIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA4Tubulin alpha-2 chain [Source:UniProtKB/Swiss-Prot;Acc:B9DGT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.