Factsheet for HORVU1Hr1G023030.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G107300.1	Wheat	cytosol	100.0	100.0
TraesCS1B01G124800.1	Wheat	cytosol	100.0	100.0
TraesCS1A01G099400.1	Wheat	cytosol	99.79	99.79
Os05t0156600-01	Rice	cytosol	96.59	96.59
EES19069	Sorghum	cytosol	96.16	96.16
Zm00001d037582_P001	Maize	cytosol, extracellular	95.52	95.52
GSMUA_Achr1P14750_001	Banana	cytosol	95.52	93.72
VIT_15s0046g01350.t01	Wine grape	cytosol	92.32	91.35
AT5G05620.1	Thale cress	cytosol	90.83	89.87
KRH68880	Soybean	endoplasmic reticulum	90.62	89.66
AT3G61650.1	Thale cress	cytosol	90.41	89.45
KRG97131	Soybean	cytosol	89.98	89.03
Zm00001d009780_P003	Maize	cytosol	95.52	88.54
Bra007622.1-P	Field mustard	cytosol	89.13	88.37
CDX71723	Canola	cytosol	89.13	88.37
CDY11370	Canola	cytosol	89.13	88.37
PGSC0003DMT400039263	Potato	cytosol	88.91	87.97
Solyc03g111380.2.1	Tomato	cytosol	88.7	87.76
HORVU6Hr1G027620.1	Barley	plasma membrane	33.69	35.43
HORVU7Hr1G107100.2	Barley	cytosol, nucleus	33.48	35.2
HORVU1Hr1G068170.1	Barley	cytosol	32.84	34.45
HORVU0Hr1G026030.2	Barley	cytosol	32.84	34.45
HORVU2Hr1G037560.2	Barley	cytosol	25.37	32.6
HORVU4Hr1G002530.2	Barley	cytosol	33.9	32.32
HORVU4Hr1G067370.1	Barley	cytosol	30.06	31.4
HORVU5Hr1G100900.2	Barley	cytosol	33.69	31.23
HORVU4Hr1G009520.1	Barley	cytosol, plasma membrane	29.85	31.04
HORVU3Hr1G078940.1	Barley	mitochondrion	33.05	30.82
HORVU1Hr1G081280.1	Barley	cytosol	29.42	30.6
HORVU1Hr1G064870.3	Barley	mitochondrion	33.26	29.71
HORVU5Hr1G098960.2	Barley	cytosol, mitochondrion	30.06	28.31
HORVU2Hr1G037550.2	Barley	cytosol	26.01	26.99
HORVU2Hr1G037570.3	Barley	cytosol	25.37	26.8
HORVU4Hr1G087740.1	Barley	cytosol	24.95	24.95

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.2.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	UniProt:A0A287EWW5	GO:GO:0000166
GO:GO:0000930	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874
GO:GO:0007017	GO:GO:0007020	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0031122	InterPro:Gamma_tubulin	EnsemblPlantsGene:HORVU1Hr1G023030	EnsemblPlants:HORVU1Hr1G023030.2	InterPro:IPR023123	InterPro:IPR036525
InterPro:IPR037103	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01164	ScanProsite:PS00227
PANTHER:PTHR11588	PANTHER:PTHR11588:SF7	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307
InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C
InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI00000A9125	:	:	:

Description

Tubulin gamma chain [Source:UniProtKB/TrEMBL;Acc:A0A287EWW5]

Coordinates

chrchr1H:+:100249094..100261649

Molecular Weight (calculated)

52778.1 Da

IEP (calculated)

5.785

GRAVY (calculated)

-0.279

Length

469 amino acids

Sequence
(BLAST)

001: MPREIITIQV GQCGNQIGME FWKQLCLEHG IGKDGLLEDF ATQGGDRKDV FFYQADDQHY IPRALLMDLE PRVINGIQNS EYKNLFNHEN IYLSEHGGGA
101: GNNWASGYHQ GEQVVDDIMD MVDREADGSD SLEGFVLCHS IAGGTGSGMG SYVLETLNDR YSKKLVQTYS VFPNQMETSD VVVQPYNSLL TLKRLTLNAD
201: CVVVLDNTAL NRIAVERLHL ANPTFAQTNS LVSTVMSAST TTLRYPGYMN NDLAGLLASL IPTPRCHFLM TGYTPLTVER QVNMIRKTTV LDVMRRLLQT
301: KNIMVSSYAR TKEASQAKYI SILNIIQGEV DPTQVHESLQ RIRERKLVNF VEWGPASIQV ALSRKSPYVQ TTHRVSGLML ANHTSIRHLF SKCLGQYEKL
401: RKKQAFLDNY RKFPMFADND LSEFDESREI IEGLVDEYKA CESPDYIKWG MEDLGDANVA AALESKLVV

Best Arabidopsis Sequence Match ( AT5G05620.1 )
(BLAST)

001: MPREIITLQV GQCGNQIGME FWKQLCLEHG ISKDGILEDF ATQGGDRKDV FFYQADDQHY IPRALLIDLE PRVINGIQNG EYRNLYNHEN IFLSDHGGGA
101: GNNWASGYHQ GKGVEEEIMD MIDREADGSD SLEGFVLCHS IAGGTGSGMG SYLLETLNDR YSKKLVQTYS VFPNQMETSD VVVQPYNSLL TLKRLTLNAD
201: CVVVLDNTAL NRIAVERLHL TNPTFAQTNS LVSTVMSAST TTLRYPGYMN NDLVGLLASL IPTPRCHFLM TGYTPLTVER QANVIRKTTV LDVMRRLLQT
301: KNIMVSSYAR NKEASQAKYI SILNIIQGEV DPTQVHESLQ RIRERKLVNF IDWGPASIQV ALSKKSPYVQ TSHRVSGLML ASHTSIRHLF SRCLSQYDKL
401: RKKQAFLDNY RKFPMFADND LSEFDESRDI IESLVDEYKA CESPDYIKWG MEDPGQLMTG EGNASGVADP KLAF

Arabidopsis Description

TUBG2Tubulin gamma-2 chain [Source:UniProtKB/Swiss-Prot;Acc:P38558]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.