Factsheet for HORVU1Hr1G081280.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
extracellular 1
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G353100.5	Wheat	cytosol	99.78	99.78
TraesCS1B01G364500.3	Wheat	cytosol	99.78	99.78
TraesCS1A01G350200.1	Wheat	golgi	99.78	99.78
KXG37669	Sorghum	cytosol	98.67	98.67
HORVU4Hr1G009520.1	Barley	cytosol, plasma membrane	98.67	98.67
KXG37668	Sorghum	cytosol	98.23	98.23
Zm00001d013367_P001	Maize	plastid	98.23	98.23
Zm00001d033850_P003	Maize	cytosol	98.0	98.0
Os11t0247300-01	Rice	plasma membrane	97.78	97.78
VIT_00s1322g00010.t01	Wine grape	cytosol	59.2	97.09
GSMUA_Achr7P17960_001	Banana	cytosol	84.48	95.97
Solyc12g088180.1.1	Tomato	cytosol	47.23	93.83
HORVU2Hr1G037560.2	Barley	cytosol	74.94	92.6
HORVU4Hr1G067370.1	Barley	cytosol	88.03	88.42
HORVU5Hr1G098960.2	Barley	cytosol, mitochondrion	96.45	87.35
HORVU2Hr1G037550.2	Barley	cytosol	86.25	86.06
HORVU2Hr1G037570.3	Barley	cytosol	81.82	83.11
CDY46272	Canola	cytosol	45.45	70.93
Bra020572.1-P	Field mustard	cytosol	64.3	61.97
CDY05559	Canola	mitochondrion	64.3	57.65
HORVU1Hr1G068170.1	Barley	cytosol	41.91	42.28
HORVU0Hr1G026030.2	Barley	cytosol	41.91	42.28
HORVU6Hr1G027620.1	Barley	plasma membrane	41.46	41.93
HORVU7Hr1G107100.2	Barley	cytosol, nucleus	41.24	41.7
HORVU3Hr1G078940.1	Barley	mitochondrion	41.91	37.57
HORVU4Hr1G002530.2	Barley	cytosol	40.35	36.99
HORVU5Hr1G100900.2	Barley	cytosol	41.24	36.76
HORVU1Hr1G064870.3	Barley	mitochondrion	41.91	36.0
HORVU4Hr1G087740.1	Barley	cytosol	32.82	31.56
HORVU1Hr1G023030.2	Barley	cytosol	30.6	29.42

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Alpha_tubulin	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	EnsemblPlantsGene:HORVU1Hr1G081280	EnsemblPlants:HORVU1Hr1G081280.1	InterPro:IPR023123	InterPro:IPR036525
InterPro:IPR037103	UniProt:M0YMF1	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01162
ScanProsite:PS00227	PANTHER:PTHR11588	PANTHER:PTHR11588:SF254	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490
SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf
InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000013697C	SEG:seg	:

Description

Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:M0YMF1]

Coordinates

chrchr1H:+:527410688..527413835

Molecular Weight (calculated)

49703.7 Da

IEP (calculated)

4.643

GRAVY (calculated)

-0.204

Length

451 amino acids

Sequence
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPGDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GAYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLSDNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLDIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVNEFQTNLV PYPRIHFMLS SYAPVISAEK AYHEQLSVAE ITNSAFEPSS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVATIKTKRT IQFVDWCPTG FKCGINYQPP GVVPGGDLAK VQRAVCMISN STSVVEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEFD DGEDGDEGDE Y

Best Arabidopsis Sequence Match ( AT4G14960.2 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPGDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLNIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA6Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A178UXP7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.