Factsheet for HORVU4Hr1G002530.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 1
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G296600.1	Wheat	cytosol	89.63	99.1
TraesCS4D01G015400.1	Wheat	cytosol	89.43	98.88
TraesCS4B01G017100.1	Wheat	cytosol	89.02	98.43
Os03t0661300-01	Rice	plasma membrane	85.57	94.39
Zm00001d033457_P001	Maize	plasma membrane	84.96	93.93
EER93713	Sorghum	cytosol	84.76	93.71
Zm00001d013612_P002	Maize	plasma membrane	84.55	93.06
HORVU7Hr1G107100.2	Barley	cytosol, nucleus	82.93	91.48
HORVU6Hr1G027620.1	Barley	plasma membrane	82.72	91.26
CDX68422	Canola	cytosol	52.44	89.9
HORVU0Hr1G026030.2	Barley	cytosol	81.5	89.71
HORVU1Hr1G068170.1	Barley	cytosol	81.5	89.71
VIT_02s0025g03540.t01	Wine grape	cytosol	80.89	89.64
KRH41169	Soybean	cytosol	80.69	89.21
KRH59870	Soybean	endoplasmic reticulum	80.69	89.01
HORVU3Hr1G078940.1	Barley	mitochondrion	84.55	82.7
HORVU5Hr1G100900.2	Barley	cytosol	83.33	81.03
HORVU1Hr1G064870.3	Barley	mitochondrion	82.93	77.71
HORVU4Hr1G087740.1	Barley	cytosol	66.67	69.94
HORVU2Hr1G037560.2	Barley	cytosol	30.28	40.82
HORVU4Hr1G009520.1	Barley	cytosol, plasma membrane	37.2	40.58
HORVU1Hr1G081280.1	Barley	cytosol	36.99	40.35
HORVU4Hr1G067370.1	Barley	cytosol	35.77	39.2
HORVU5Hr1G098960.2	Barley	cytosol, mitochondrion	38.62	38.15
HORVU2Hr1G037550.2	Barley	cytosol	33.74	36.73
HORVU2Hr1G037570.3	Barley	cytosol	32.52	36.04
HORVU1Hr1G023030.2	Barley	cytosol	32.32	33.9

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	UniProt:A0A287MXK3	InterPro:Beta_tubulin
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198
GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	EnsemblPlantsGene:HORVU4Hr1G002530	EnsemblPlants:HORVU4Hr1G002530.2	InterPro:IPR023123
InterPro:IPR036525	InterPro:IPR037103	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01163
ScanProsite:PS00227	PANTHER:PTHR11588	PANTHER:PTHR11588:SF246	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490
SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf
InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000B47FFE7	SEG:seg	:

Description

Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A287MXK3]

Coordinates

chrchr4H:-:4892663..4896374

Molecular Weight (calculated)

54962.8 Da

IEP (calculated)

4.807

GRAVY (calculated)

-0.501

Length

492 amino acids

Sequence
(BLAST)

001: PGNAAYRRAH DPLPPSHPRS LDRPRSTNQP RPAQEEPPGD RPTRPDRGKM REILHIQGGQ CGNQIGAKFW EVICGEHGVD PTGQYTGTAP EQLERMDVYF
101: NEAGGNRYVP RAVLMDLEPG TMDSLRSGPI GAIFRPDNFV YGQSGAGNNW AKGHYTEGAE LIDSVLDVVR KEAENSDCLQ GFQVCHSLGG GTGSGMGTLL
201: ISKIREEYPD RMMLTFSVFP SPKVSDTVVE PYNATLSVHQ LVENADECMV LDNEALYDIC FRTLKLTNPS FGDLNHLISA TMSGVTCCLR FPGQLNSDLR
301: KLAVNLIPFP RLHFFMVGFA PLTSRGSQQY RALTVPELTQ QMWDAKNMMC AADPRHGRYL TASAMFRGKM STKEVDEQMM NVQNKNSSYF VEWIPNNVKS
401: SVCDIPPVGL AMSSTFVGNS TSIQEMFRRV SEQFTAMFRR KAFLHWYTSE GMDEMEFTEA ESNMNDLVAE YQQYQDATAE EYDEEEPAGD EA

Best Arabidopsis Sequence Match ( AT5G44340.1 )
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVICDEHGI DHTGQYVGDS PLQLERIDVY FNEASGGKYV PRAVLMDLEP GTMDSLRSGP FGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENSDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLANP TFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YSALSVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAVFRGK LSTKEVDEQM MNIQNKNSSY FVEWIPNNVK SSVCDIAPKG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATA GEEEYEEEEE EYET

Arabidopsis Description

TUBB4Tubulin beta-4 chain [Source:UniProtKB/Swiss-Prot;Acc:P24636]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.