Factsheet for VIT_02s0025g03540.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
extracellular 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	77.7	94.78
KRH59870	Soybean	endoplasmic reticulum	94.37	93.95
GSMUA_Achr5P12310_001	Banana	cytosol	72.3	93.86
GSMUA_Achr4P26250_001	Banana	cytosol	94.14	93.72
KRH41169	Soybean	cytosol	93.92	93.71
VIT_08s0040g00980.t01	Wine grape	cytosol	92.34	91.72
VIT_06s0009g02020.t01	Wine grape	cytosol	91.89	91.48
VIT_10s0003g05320.t01	Wine grape	cytosol	91.44	91.24
VIT_16s0050g00380.t01	Wine grape	cytosol	92.12	91.09
VIT_02s0025g03680.t01	Wine grape	cytosol	91.67	91.05
VIT_17s0000g02450.t01	Wine grape	cytosol	91.22	91.01
VIT_06s0004g05870.t01	Wine grape	cytosol	90.77	90.36
VIT_18s0001g14360.t01	Wine grape	cytosol	90.99	90.18
GSMUA_Achr5P10720_001	Banana	cytosol	76.35	90.16
Os03t0661300-01	Rice	plasma membrane	90.54	90.13
VIT_08s0007g01630.t01	Wine grape	cytosol	90.54	89.93
Zm00001d033457_P001	Maize	plasma membrane	90.09	89.89
TraesCS4D01G015400.1	Wheat	cytosol	89.86	89.66
EER93713	Sorghum	cytosol	89.64	89.44
TraesCS4B01G017100.1	Wheat	cytosol	89.64	89.44
TraesCS4A01G296600.1	Wheat	cytosol	89.64	89.44
Zm00001d013612_P002	Maize	plasma membrane	89.86	89.26
CDX68422	Canola	cytosol	57.21	88.5
HORVU4Hr1G002530.2	Barley	cytosol	89.64	80.89
HORVU4Hr1G087740.1	Barley	cytosol	70.72	66.95
Zm00001d026623_P001	Maize	cytosol, plastid	45.5	48.67
VIT_00s0373g00010.t01	Wine grape	cytosol	31.98	44.1
VIT_14s0108g00440.t01	Wine grape	cytosol	42.57	42.0
VIT_18s0001g08250.t01	Wine grape	cytosol	42.34	41.69
VIT_03s0088g00380.t01	Wine grape	cytosol	41.89	41.33
VIT_08s0007g07260.t01	Wine grape	cytosol	41.44	41.26
VIT_06s0004g00480.t01	Wine grape	cytosol	41.22	40.76
VIT_00s1322g00010.t01	Wine grape	cytosol	24.55	39.64
VIT_15s0046g01350.t01	Wine grape	cytosol	35.36	33.12

Protein Annotations

Gene3D:1.10.287.600	EntrezGene:100244399	wikigene:100244399	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440
InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin	ProteinID:CCB58351	ProteinID:CCB58351.1	ncoils:Coil	UniProt:F6HUC8
EMBL:FN596251	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198
GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103
EntrezGene:LOC100244399	wikigene:LOC100244399	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01163
ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF124	SMART:SM00864	SMART:SM00865
SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf
InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI00015CD56A	ArrayExpress:VIT_02s0025g03540
EnsemblPlantsGene:VIT_02s0025g03540	EnsemblPlants:VIT_02s0025g03540.t01	unigene:Vvi.23764	unigene:Vvi.6238	RefSeq:XP_002273514	RefSeq:XP_002273514.1
SEG:seg	:	:	:	:	:

Description

Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:F6HUC8]

Coordinates

chr2:+:3047613..3049237

Molecular Weight (calculated)

50057.4 Da

IEP (calculated)

4.583

GRAVY (calculated)

-0.356

Length

444 amino acids

Sequence
(BLAST)

001: MREILHIQAG QCGNQIGGKF WEVVCDEHGI DTKGNYVGDS HLQLERVNVY YNEASGGRYV PRAVLMDLEP GTMDSLRTGP YGKIFRPDNF VFGQNGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQICHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTNP SFGDLNHLIS TTMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTIPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIPPTG LAMSSTFMGN STSIQEMFRR VSEQFTVMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQEAVA AEDEEEYDEE VMEN

Best Arabidopsis Sequence Match ( AT5G12250.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVCDEHGI DPTGRYVGNS DLQLERVNVY YNEASCGRYV PRAILMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIAPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEGEYEEDE DEEEILDHE

Arabidopsis Description

TUBB6Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UPR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.