CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 4
extracellular 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41169	Soybean	cytosol	97.31	97.53
VIT_02s0025g03540.t01	Wine grape	cytosol	93.95	94.37
GSMUA_AchrUn_...	Banana	cytosol	75.11	92.03
KRH58404	Soybean	nucleus	90.81	91.63
GSMUA_Achr5P12310_001	Banana	cytosol	70.18	91.52
GSMUA_Achr4P26250_001	Banana	cytosol	91.03	91.03
KRH42279	Soybean	cytosol	90.36	90.97
KRH36829	Soybean	nucleus	90.58	90.58
KRH11812	Soybean	nucleus	90.58	90.58
KRG95065	Soybean	plasma membrane	91.26	90.44
KRH66728	Soybean	nucleus	90.81	90.2
KRH51701	Soybean	nucleus	90.58	90.18
KRH61035	Soybean	nucleus	90.58	89.98
Zm00001d033457_P001	Maize	plasma membrane	89.69	89.89
KRH05958	Soybean	nucleus	90.36	89.75
Os03t0661300-01	Rice	plasma membrane	89.69	89.69
EER93713	Sorghum	cytosol	89.24	89.44
TraesCS4A01G296600.1	Wheat	cytosol	89.24	89.44
TraesCS4D01G015400.1	Wheat	cytosol	89.01	89.21
TraesCS4B01G017100.1	Wheat	cytosol	88.79	88.99
KRH35301	Soybean	nucleus	89.24	88.84
KRG91525	Soybean	nucleus	89.24	88.84
Zm00001d013612_P002	Maize	plasma membrane	89.01	88.81
KRH41834	Soybean	cytosol	88.56	88.76
KRH65977	Soybean	nucleus	89.24	88.64
KRH75786	Soybean	nucleus	89.01	88.42
KRH17435	Soybean	nucleus	90.58	88.4
KRH60536	Soybean	endoplasmic reticulum	88.12	88.31
CDX68422	Canola	cytosol	56.28	87.46
GSMUA_Achr5P10720_001	Banana	cytosol	73.54	87.23
HORVU4Hr1G002530.2	Barley	cytosol	89.01	80.69
HORVU4Hr1G087740.1	Barley	cytosol	69.51	66.1
Zm00001d026623_P001	Maize	cytosol, plastid	45.52	48.92
KRH04356	Soybean	cytosol	25.34	45.02
KRH35640	Soybean	cytosol, nucleus	41.03	40.76
KRH58942	Soybean	nucleus	40.81	40.53
KRG91143	Soybean	nucleus	40.81	40.53
KRH42841	Soybean	cytosol, nucleus	40.81	40.44
KRH08505	Soybean	cytosol, endoplasmic reticulum, nucleus	40.13	40.32
KRH58181	Soybean	nucleus	40.58	40.22
KRH06693	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	39.91	40.18
KRH77187	Soybean	endoplasmic reticulum	40.36	39.91
KRH28301	Soybean	cytosol, endoplasmic reticulum	40.36	39.91
KRH52851	Soybean	cytosol, nucleus	40.36	39.82
KRH62139	Soybean	nucleus	40.36	39.82
KRG94842	Soybean	cytosol, endoplasmic reticulum, mitochondrion	40.13	39.69
KRH04357	Soybean	cytosol	13.23	34.71
KRG97131	Soybean	cytosol	34.75	32.7
KRH68880	Soybean	endoplasmic reticulum	34.75	32.7

Protein Annotations

Gene3D:1.10.287.600	EntrezGene:100797652	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	UniProt:A0A0R0JYY8
EMBL:ACUP02003342	InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin	ncoils:Coil	EnsemblPlantsGene:GLYMA_05G207500	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856
GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	EnsemblPlants:KRH59870	ProteinID:KRH59870
ProteinID:KRH59870.1	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227
ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF124	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490
SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf
InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000151E3C2	SEG:seg	:

Description

hypothetical protein

Coordinates

chr5:-:38969844..38973417

Molecular Weight (calculated)

49982.3 Da

IEP (calculated)

4.641

GRAVY (calculated)

-0.328

Length

446 amino acids

Sequence
(BLAST)

001: MREILHVQAG QCGNQIGGKF WEVMCDEHGI DATGNYVGNS HLQLERVNVY YNEASGGRYV PRAVLMDLEP GTMDSLRSGP FGKIFRPDNF VFGQNGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQICHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTNP SFGDLNHLIS TTMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRSLTIPELT QQMWDARNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDQQM INVQNKNSSY FVEWIPNNVK SSVCDIPPTG LSMSSTFMGN STSIQEMFRR VSEQFTVMFK RKAFLHWYTA
401: EGMDEMEFTE AESNMNDLVA EYQQYQDAAA SEEGENEIDD EEAMAA

Best Arabidopsis Sequence Match ( AT5G12250.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVCDEHGI DPTGRYVGNS DLQLERVNVY YNEASCGRYV PRAILMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIAPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEGEYEEDE DEEEILDHE

Arabidopsis Description

TUBB6Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UPR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.