CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06693	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	90.99	91.2
KRG94842	Soybean	cytosol, endoplasmic reticulum, mitochondrion	90.99	89.58
KRH42841	Soybean	cytosol, nucleus	89.64	88.44
KRH58942	Soybean	nucleus	89.41	88.42
AT1G64740.1	Thale cress	cytosol	86.49	85.33
KRH04356	Soybean	cytosol	47.97	84.86
VIT_08s0007g07260.t01	Wine grape	cytosol	85.14	84.75
KRG91143	Soybean	nucleus	85.14	84.19
KRH58181	Soybean	nucleus	85.14	84.0
KRH35640	Soybean	cytosol, nucleus	84.91	83.96
KRH62139	Soybean	nucleus	85.36	83.85
KRH28301	Soybean	cytosol, endoplasmic reticulum	85.14	83.81
KRH52851	Soybean	cytosol, nucleus	85.14	83.63
KRH77187	Soybean	endoplasmic reticulum	84.68	83.37
KRH04357	Soybean	cytosol	31.53	82.35
KRH36829	Soybean	nucleus	41.67	41.48
KRH11812	Soybean	nucleus	41.67	41.48
KRH41834	Soybean	cytosol	41.44	41.35
KRH60536	Soybean	endoplasmic reticulum	41.44	41.35
KRH75786	Soybean	nucleus	41.67	41.2
KRH65977	Soybean	nucleus	41.67	41.2
KRH66728	Soybean	nucleus	41.67	41.2
KRH58404	Soybean	nucleus	40.99	41.18
KRG95065	Soybean	plasma membrane	41.67	41.11
KRH61035	Soybean	nucleus	41.44	40.98
KRH42279	Soybean	cytosol	40.77	40.86
KRG91525	Soybean	nucleus	40.99	40.62
KRH51701	Soybean	nucleus	40.99	40.62
KRH35301	Soybean	nucleus	40.99	40.62
KRH05958	Soybean	nucleus	40.99	40.53
KRH59870	Soybean	endoplasmic reticulum	40.32	40.13
KRH17435	Soybean	nucleus	40.99	39.82
KRH41169	Soybean	cytosol	39.86	39.78
KRH68880	Soybean	endoplasmic reticulum	31.53	29.54
KRG97131	Soybean	cytosol	31.31	29.32

Protein Annotations

Gene3D:1.10.287.600	EntrezGene:100780531	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	EMBL:ACUP02010182
InterPro:Alpha_tubulin	InterPro:Beta-tubulin_BS	ncoils:Coil	EnsemblPlantsGene:GLYMA_16G154000	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010
GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	UniProt:I1MNV2
InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	EnsemblPlants:KRH08505	ProteinID:KRH08505	ProteinID:KRH08505.1
PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01162	ScanProsite:PS00227	ScanProsite:PS00228
PANTHER:PTHR11588	PANTHER:PTHR11588:SF137	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307
InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C
InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000233BEC8	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr16:+:31450077..31455500

Molecular Weight (calculated)

49505.8 Da

IEP (calculated)

4.678

GRAVY (calculated)

-0.159

Length

444 amino acids

Sequence
(BLAST)

001: MREIISIHIG QAGIQVGNSC WELYCLEHGI QPDGTMPSDG SNDAHDAFNT FFSEIGTGQY VPRALFVDLE PSVIDEIRCG PYKQLFHPEQ LMSGKEDAAN
101: NFARGHYTVG KEIEELCLDR IRKLADNCTG LQGFLVFNAV GGGTGSGLGS LLLERLSVDY GKKSKLGFII YPSPQVSTAV VEPYNTVLSN HSLIEHSDVV
201: VLLDNEAIYD ICRRSLELER PNYTNLNRLI SQIISSLTTS LRFDGAINVD ISEFQTNLVP YPRIHFMLSS YAPVISAAKA YHEQLSVPEI TRAVFEPSSM
301: MVKCDPRHGK YMACCLMYRG DVFPKDVNLA VSNIKTKRQV QFVDWCPTGF KCGINYQAPT VVPEGDLAKV QRAVCMISNN TAVAEVFSRI DHKFDLMFAK
401: RAFVHWYVSE GMEEGEFSEA REDLAALEKD YEEVGDEGVD EDDV

Best Arabidopsis Sequence Match ( AT1G04820.1 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLSIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA4Tubulin alpha-2 chain [Source:UniProtKB/Swiss-Prot;Acc:B9DGT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.