Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G19780.1 | Thale cress | cytosol | 92.22 | 92.22 |
| AT5G19770.1 | Thale cress | cytosol | 92.22 | 92.22 |
| HORVU2Hr1G037560.2 | Barley | cytosol | 74.22 | 91.51 |
| TraesCS4A01G065700.1 | Wheat | cytosol | 90.0 | 90.2 |
| EER92631 | Sorghum | cytosol | 89.78 | 90.18 |
| TraesCS4D01G242700.1 | Wheat | cytosol | 89.78 | 89.98 |
| TraesCS4B01G243100.1 | Wheat | cytosol | 89.78 | 89.98 |
| HORVU4Hr1G067370.1 | Barley | cytosol | 89.56 | 89.75 |
| Os03t0219300-01 | Rice | cytosol, plasma membrane, plastid | 89.33 | 89.53 |
| Zm00001d048065_P002 | Maize | cytosol, mitochondrion | 88.89 | 89.29 |
| AT1G04820.1 | Thale cress | cytosol | 88.44 | 88.44 |
| AT1G50010.1 | Thale cress | cytosol | 88.44 | 88.44 |
| AT4G14960.2 | Thale cress | cytosol | 88.22 | 88.22 |
| KRH08505 | Soybean | cytosol, endoplasmic reticulum, nucleus | 85.33 | 86.49 |
| VIT_08s0007g07260.t01 | Wine grape | cytosol | 85.11 | 85.87 |
| AT5G62690.1 | Thale cress | cytosol | 42.22 | 42.22 |
| AT5G62700.1 | Thale cress | cytosol | 42.22 | 42.22 |
| AT5G44340.1 | Thale cress | cytosol | 41.33 | 41.89 |
| AT5G23860.1 | Thale cress | cytosol | 41.78 | 41.87 |
| AT5G12250.1 | Thale cress | cytosol | 41.78 | 41.87 |
| AT4G20890.1 | Thale cress | cytosol | 41.11 | 41.67 |
| AT1G20010.1 | Thale cress | cytosol | 41.56 | 41.65 |
| AT1G75780.1 | Thale cress | cytosol | 41.33 | 41.61 |
| AT2G29550.1 | Thale cress | cytosol | 41.33 | 41.43 |
| AT5G05620.1 | Thale cress | cytosol | 30.44 | 28.9 |
| AT3G61650.1 | Thale cress | cytosol | 29.78 | 28.27 |
| Os03t0780800-01 | Rice | cytosol | 1.11 | 2.11 |
Protein Annotations
| Gene3D:1.10.287.600 | MapMan:20.1.1.1 | Gene3D:3.30.1330.20 | Gene3D:3.40.50.1440 | EntrezGene:842782 | UniProt:A0A178WLQ0 |
| ProteinID:AAA32880.1 | ProteinID:AAD38249.1 | ProteinID:AEE34279.1 | ArrayExpress:AT1G64740 | EnsemblPlantsGene:AT1G64740 | RefSeq:AT1G64740 |
| TAIR:AT1G64740 | RefSeq:AT1G64740-TAIR-G | EnsemblPlants:AT1G64740.1 | TAIR:AT1G64740.1 | EMBL:AY059728 | EMBL:AY091372 |
| InterPro:Alpha_tubulin | Unigene:At.328 | InterPro:Beta-tubulin_BS | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005198 | GO:GO:0005200 | GO:GO:0005488 | GO:GO:0005525 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005856 |
| GO:GO:0005874 | GO:GO:0005886 | GO:GO:0007010 | GO:GO:0007017 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016787 | InterPro:IPR023123 | InterPro:IPR036525 | InterPro:IPR037103 |
| RefSeq:NP_176654.1 | ProteinID:OAP19230.1 | UniProt:P11139 | PFAM:PF00091 | PFAM:PF03953 | PO:PO:0000005 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR01161 | PRINTS:PR01162 | ScanProsite:PS00227 |
| ScanProsite:PS00228 | PANTHER:PTHR11588 | PANTHER:PTHR11588:SF48 | SMART:SM00864 | SMART:SM00865 | SUPFAM:SSF52490 |
| SUPFAM:SSF55307 | Symbol:TUA1 | InterPro:Tub_FtsZ_C | InterPro:Tubulin | InterPro:Tubulin/FtsZ_2-layer-sand-dom | InterPro:Tubulin/FtsZ_C_sf |
| InterPro:Tubulin/FtsZ_GTPase_sf | InterPro:Tubulin_C | InterPro:Tubulin_CS | InterPro:Tubulin_FtsZ_GTPase | UniParc:UPI000000177D | SEG:seg |
Description
TUBA1Tubulin alpha-1 chain [Source:UniProtKB/Swiss-Prot;Acc:P11139]
Coordinates
chr1:+:24050006..24052487
Molecular Weight (calculated)
49802.8 Da
IEP (calculated)
4.678
GRAVY (calculated)
-0.194
Length
450 amino acids
Sequence
(BLAST)
(BLAST)
001: MREIISIHIG QAGIQVGNSC WELYCLEHGI QPDGTMPSDS TVGACHDAFN TFFSETSSGQ HVPRAVFLDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTV GREIVDTCLE RLRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD FGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: VVLLDNEAIY DICRRSLDIE RPTYSNLNRL ISQTISSLTT SLRFDGAINV DITEFQTNLV PYPRIHFMLS SYAPVISSAK AYHEQFSVPE ITTSVFEPSN
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNT AVAAIKAKRT IQFVDWCPTG FKCGINYQPP SVVPGGDLAK VQRAVCMISN NTAVAEVFSR IDHKFDLMYS
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGGEGA EDDDEEGDEY
101: NNFARGHYTV GREIVDTCLE RLRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD FGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: VVLLDNEAIY DICRRSLDIE RPTYSNLNRL ISQTISSLTT SLRFDGAINV DITEFQTNLV PYPRIHFMLS SYAPVISSAK AYHEQFSVPE ITTSVFEPSN
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNT AVAAIKAKRT IQFVDWCPTG FKCGINYQPP SVVPGGDLAK VQRAVCMISN NTAVAEVFSR IDHKFDLMYS
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGGEGA EDDDEEGDEY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.