Factsheet for Os03t0219300-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

cytosol 4
vacuole 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92631	Sorghum	cytosol	96.44	96.65
Zm00001d048065_P002	Maize	cytosol, mitochondrion	95.99	96.21
TraesCS4A01G065700.1	Wheat	cytosol	95.77	95.77
TraesCS4D01G242700.1	Wheat	cytosol	95.55	95.55
HORVU4Hr1G067370.1	Barley	cytosol	95.55	95.55
TraesCS4B01G243100.1	Wheat	cytosol	95.55	95.55
CDY42294	Canola	cytosol	91.76	91.56
CDY42295	Canola	cytosol	91.76	91.56
Bra020062.1-P	Field mustard	cytosol	91.54	91.33
CDX70890	Canola	cytosol	91.54	91.33
CDX88875	Canola	cytosol	91.54	91.33
KRH06693	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	89.98	91.2
CDY44941	Canola	cytosol	91.31	91.11
CDY44942	Canola	cytosol	91.31	91.11
CDX92501	Canola	cytosol	91.09	90.89
CDX92502	Canola	cytosol	91.09	90.89
Bra002261.1-P	Field mustard	cytosol	91.09	90.89
Bra006517.1-P	Field mustard	cytosol	90.87	90.67
KRG94842	Soybean	cytosol, endoplasmic reticulum, mitochondrion	90.65	90.24
Os07t0574800-02	Rice	plasma membrane	90.2	90.0
Bra020061.1-P	Field mustard	cytosol	90.2	90.0
AT1G64740.1	Thale cress	cytosol	89.53	89.33
Bra002260.1-P	Field mustard	cytosol	81.29	89.02
Os11t0247300-01	Rice	plasma membrane	86.86	86.47
Os03t0726100-01	Rice	nucleus	86.41	86.03
VIT_08s0007g07260.t01	Wine grape	cytosol	84.19	84.75
Os06t0671900-01	Rice	plasma membrane	41.65	41.93
Os01t0282800-02	Rice	plasma membrane	41.43	41.61
Os01t0805900-01	Rice	plasma membrane	41.2	41.39
Os05t0413200-01	Rice	plasma membrane	40.76	41.22
Os02t0167300-01	Rice	plasma membrane	40.98	41.16
Os03t0780600-01	Rice	plastid	40.53	40.99
Os03t0105600-01	Rice	plasma membrane	40.76	40.94
Os03t0661300-01	Rice	plasma membrane	39.87	40.13
Os05t0156600-01	Rice	cytosol	31.4	30.06
Os03t0780800-01	Rice	cytosol	1.11	2.11

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	EntrezGene:4332083	ProteinID:ABF94675.1
EMBL:AK071837	InterPro:Alpha_tubulin	ProteinID:BAF11314.1	ProteinID:BAS82999.1	InterPro:Beta-tubulin_BS	ncoils:Coil
EMBL:DQ683572	ProteinID:EEE58605.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005856	GO:GO:0005874	GO:GO:0005886
GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	EnsemblPlantsGene:Os03g0219300	EnsemblPlants:Os03t0219300-01
PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01162	ScanProsite:PS00227	ScanProsite:PS00228
PANTHER:PTHR11588	PANTHER:PTHR11588:SF189	UniProt:Q10PW2	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490
SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf
InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0000DB4535	RefSeq:XP_015631405.1	SEG:seg

Description

Similar to Tubulin alpha-2 chain (Alpha-2 tubulin). (Os03t0219300-01)

Coordinates

chr3:-:6275829..6279463

Molecular Weight (calculated)

50063.4 Da

IEP (calculated)

4.895

GRAVY (calculated)

-0.191

Length

449 amino acids

Sequence
(BLAST)

001: MREIISIHIG QAGIQVGNSC WELYCLEHGI QPDGLMPSDT TPGIARDAFN TFFSETSSGK HVPRALFVDL EPTVIDEVKT GPYRQLFHPE QLISYKEDAA
101: NNFARGHYTV GREVVDLCLD RLRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGRKSKLGFT IYPSPQISTA VVEPYNSVLS THSLIEHTDV
201: VVLLDNEAIY DICKRSLDIE RPTYTNLNRL ISQVISSLTT SLRFDGAINV DITEFQTNLV PYPRIHFMLS SYAPIISVEK AFHEQHSVPE ITNSVFEPAS
301: VMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVHSIKTRRT VQFVDWCPTG FKCGINYQPP TAVPGGDLAK VRRAVCMISN NTAVAEVFSR IDRKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEVE DDDEEQGEY

Best Arabidopsis Sequence Match ( AT5G19770.1 )
(BLAST)

001: MREIISIHIG QAGIQVGNSC WELYCLEHGI QPDGMMPSDT TVGVAHDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTV GKEIVDLCLD RVRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL ISQIISSLTT SLRFDGAINV DITEFQTNLV PYPRIHFMLS SYAPVISAAK AYHEQLSVPE ITNAVFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT VQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN NTAVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEEDEGEDY

Arabidopsis Description

TUBA3Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A178UTQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.