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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY44941 Canola cytosol 100.0 100.0
Bra020062.1-P Field mustard cytosol 99.78 99.78
CDY42294 Canola cytosol 99.56 99.56
CDY42295 Canola cytosol 99.56 99.56
AT5G19780.1 Thale cress cytosol 99.33 99.33
AT5G19770.1 Thale cress cytosol 99.33 99.33
CDX92502 Canola cytosol 99.33 99.33
CDX92501 Canola cytosol 99.33 99.33
CDX70890 Canola cytosol 99.11 99.11
CDX88875 Canola cytosol 99.11 99.11
Bra020061.1-P Field mustard cytosol 98.67 98.67
CDY35856 Canola cytosol 32.67 98.66
KRH58942 Soybean nucleus 97.11 97.33
KRH42841 Soybean cytosol, nucleus 96.89 96.89
HORVU2Hr1G037560.2 Barley cytosol 78.44 96.71
CDY66630 Canola cytosol 90.0 93.1
TraesCS4B01G243100.1 Wheat cytosol 92.22 92.43
TraesCS4D01G242700.1 Wheat cytosol 92.22 92.43
CDY29334 Canola cytosol 88.44 92.34
CDY45043 Canola cytosol 92.22 92.22
CDY03583 Canola cytosol 92.22 92.22
TraesCS4A01G065700.1 Wheat cytosol 92.0 92.2
EER92631 Sorghum cytosol 91.78 92.19
CDY50974 Canola cytosol 92.0 92.0
CDY28123 Canola cytosol 92.0 92.0
HORVU4Hr1G067370.1 Barley cytosol 91.78 91.98
CDY25017 Canola cytosol 83.78 91.95
Zm00001d048065_P002 Maize cytosol, mitochondrion 91.33 91.74
Os03t0219300-01 Rice cytosol, plasma membrane, plastid 91.11 91.31
VIT_08s0007g07260.t01 Wine grape cytosol 89.11 89.91
CDY46272 Canola cytosol 45.11 70.24
CDY05559 Canola mitochondrion 61.78 55.27
CDY31638 Canola cytosol 42.22 42.79
CDX96965 Canola cytosol 42.22 42.7
CDY14924 Canola cytosol 42.22 42.6
CDY51360 Canola cytosol 42.44 42.54
CDX97877 Canola cytosol 42.44 42.54
CDY13108 Canola cytosol 42.0 42.47
CDY60599 Canola cytosol 42.0 42.47
CDY67078 Canola cytosol 37.11 42.39
CDX84283 Canola cytosol 42.0 42.38
CDY45452 Canola cytosol 42.22 42.32
CDY53366 Canola cytosol 42.22 42.32
CDY38073 Canola cytosol 42.22 42.22
CDX84345 Canola cytosol 42.22 42.22
CDY00319 Canola cytosol 42.22 42.22
CDX86102 Canola plasma membrane 42.22 42.22
CDX87664 Canola cytosol 41.78 42.06
CDX73198 Canola cytosol 41.78 42.06
CDY69221 Canola cytosol 41.56 42.02
CDX82788 Canola cytosol 41.56 41.93
CDX94014 Canola cytosol 41.56 41.93
CDX79013 Canola cytosol 41.56 41.93
CDY31428 Canola cytosol 41.56 41.93
CDX76444 Canola cytosol 41.56 41.93
CDX80390 Canola cytosol 41.78 41.87
CDY49002 Canola cytosol 41.33 41.8
CDX98679 Canola cytosol 41.11 41.48
CDX69693 Canola cytosol 42.44 41.43
CDX99087 Canola cytosol 39.11 41.22
CDY21784 Canola cytosol 39.11 41.22
CDX88051 Canola cytosol 38.67 40.85
CDX97180 Canola cytosol 42.44 39.71
CDX68422 Canola cytosol 24.0 37.63
CDX71723 Canola cytosol 30.44 28.96
CDY11370 Canola cytosol 30.44 28.96
Os03t0780800-01 Rice cytosol 0.67 1.27
Protein Annotations
Gene3D:1.10.287.600MapMan:20.1.1.1Gene3D:3.30.1330.20Gene3D:3.40.50.1440GO:A0A078I4Y4UniProt:A0A078I4Y4
InterPro:Alpha_tubulinInterPro:Beta-tubulin_BSProteinID:CDY44941.1EnsemblPlants:CDY44942ProteinID:CDY44942ProteinID:CDY44942.1
ncoils:CoilGO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0003924GO:GO:0005198
GO:GO:0005200GO:GO:0005488GO:GO:0005525GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005856GO:GO:0005874GO:GO:0007010GO:GO:0007017GO:GO:0008150GO:GO:0009987
GO:GO:0016043GO:GO:0016787EnsemblPlantsGene:GSBRNA2T00081100001InterPro:IPR023123InterPro:IPR036525InterPro:IPR037103
PFAM:PF00091PFAM:PF03953PRINTS:PR01161PRINTS:PR01162ScanProsite:PS00227ScanProsite:PS00228
PANTHER:PTHR11588PANTHER:PTHR11588:SF48SMART:SM00864SMART:SM00865SUPFAM:SSF52490SUPFAM:SSF55307
InterPro:Tub_FtsZ_CInterPro:TubulinInterPro:Tubulin/FtsZ_2-layer-sand-domInterPro:Tubulin/FtsZ_C_sfInterPro:Tubulin/FtsZ_GTPase_sfInterPro:Tubulin_C
InterPro:Tubulin_CSInterPro:Tubulin_FtsZ_GTPaseUniParc:UPI0004EE6796SEG:seg::
Description
BnaA02g04470DTubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A078I4Y4]
Coordinates
chrLK032606:+:154842..156799
Molecular Weight (calculated)
49701.0 Da
IEP (calculated)
4.726
GRAVY (calculated)
-0.159
Length
450 amino acids
Sequence
(BLAST)
001: MREIISIHIG QAGIQVGNSC WELYCLEHGI QPDGMMPSDT TVGVAHDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTV GKEIVDLCLD RVRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL ISQIISSLTT SLRFDGAINV DITEFQTNLV PYPRIHFMLS SYAPVISAAK AYHEQLSIPE ITNAVFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT VQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN NTAVAEVFSR IDHKFDLMYS
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEEDEGEEY
Best Arabidopsis Sequence Match ( AT1G64740.1 )
(BLAST)
001: MREIISIHIG QAGIQVGNSC WELYCLEHGI QPDGTMPSDS TVGACHDAFN TFFSETSSGQ HVPRAVFLDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTV GREIVDTCLE RLRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD FGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: VVLLDNEAIY DICRRSLDIE RPTYSNLNRL ISQTISSLTT SLRFDGAINV DITEFQTNLV PYPRIHFMLS SYAPVISSAK AYHEQFSVPE ITTSVFEPSN
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNT AVAAIKAKRT IQFVDWCPTG FKCGINYQPP SVVPGGDLAK VQRAVCMISN NTAVAEVFSR IDHKFDLMYS
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGGEGA EDDDEEGDEY
Arabidopsis Description
TUBA1Tubulin alpha-1 chain [Source:UniProtKB/Swiss-Prot;Acc:P11139]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.