CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
vacuole 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, vacuole
BaCelLo:	cytosol
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161
endoplasmic reticulum: 27224218
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42841	Soybean	cytosol, nucleus	99.78	99.56
AT5G19780.1	Thale cress	cytosol	98.0	97.78
AT5G19770.1	Thale cress	cytosol	98.0	97.78
CDY42295	Canola	cytosol	97.77	97.56
CDY42294	Canola	cytosol	97.77	97.56
CDX88875	Canola	cytosol	97.77	97.56
CDX70890	Canola	cytosol	97.77	97.56
Bra020062.1-P	Field mustard	cytosol	97.55	97.33
CDX92501	Canola	cytosol	97.55	97.33
CDX92502	Canola	cytosol	97.55	97.33
Bra002261.1-P	Field mustard	cytosol	97.55	97.33
CDY44941	Canola	cytosol	97.33	97.11
CDY44942	Canola	cytosol	97.33	97.11
Bra006517.1-P	Field mustard	cytosol	96.88	96.67
Bra002260.1-P	Field mustard	cytosol	87.53	95.85
Bra020061.1-P	Field mustard	cytosol	95.99	95.78
KRH06693	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	92.87	94.13
KRG94842	Soybean	cytosol, endoplasmic reticulum, mitochondrion	94.21	93.79
KRH04356	Soybean	cytosol	51.45	92.03
KRH35640	Soybean	cytosol, nucleus	91.98	91.98
KRG91143	Soybean	nucleus	91.76	91.76
KRH62139	Soybean	nucleus	91.98	91.37
KRH52851	Soybean	cytosol, nucleus	91.76	91.15
KRH77187	Soybean	endoplasmic reticulum	91.09	90.69
KRH28301	Soybean	cytosol, endoplasmic reticulum	91.09	90.69
KRH58181	Soybean	nucleus	90.87	90.67
KRH04357	Soybean	cytosol	34.08	90.0
KRH08505	Soybean	cytosol, endoplasmic reticulum, nucleus	88.42	89.41
KRH58404	Soybean	nucleus	42.32	42.99
KRH11812	Soybean	nucleus	42.54	42.83
KRH36829	Soybean	nucleus	42.54	42.83
KRH75786	Soybean	nucleus	42.76	42.76
KRH66728	Soybean	nucleus	42.54	42.54
KRH65977	Soybean	nucleus	42.54	42.54
KRG95065	Soybean	plasma membrane	42.54	42.44
KRH42279	Soybean	cytosol	41.87	42.44
KRH51701	Soybean	nucleus	42.32	42.41
KRH05958	Soybean	nucleus	41.87	41.87
KRH61035	Soybean	nucleus	41.87	41.87
KRH41834	Soybean	cytosol	41.43	41.8
KRH60536	Soybean	endoplasmic reticulum	41.43	41.8
KRG91525	Soybean	nucleus	41.2	41.29
KRH35301	Soybean	nucleus	41.2	41.29
KRH17435	Soybean	nucleus	41.87	41.14
KRH59870	Soybean	endoplasmic reticulum	40.53	40.81
KRH41169	Soybean	cytosol	40.09	40.45
KRH68880	Soybean	endoplasmic reticulum	29.62	28.06
KRG97131	Soybean	cytosol	29.4	27.85

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	EntrezGene:732582	EMBL:ACUP02003294
InterPro:Alpha_tubulin	InterPro:Beta-tubulin_BS	ncoils:Coil	EnsemblPlantsGene:GLYMA_05G157300	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010
GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	UniProt:I1K3X9
InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	EnsemblPlants:KRH58942	ProteinID:KRH58942	ProteinID:KRH58942.1
PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01162	ScanProsite:PS00227	ScanProsite:PS00228
PANTHER:PTHR11588	PANTHER:PTHR11588:SF48	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307
InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C
InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI00023C4123	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr5:+:34976428..34978794

Molecular Weight (calculated)

49607.9 Da

IEP (calculated)

4.768

GRAVY (calculated)

-0.139

Length

449 amino acids

Sequence
(BLAST)

001: MREIISIHIG QAGIQVGNSC WELYCLEHGI QPDGMMPSDS TFGVAHDAFN TFFSETGSGK HVPRAVFVDL EPTVIDEVRC GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTV GKEIVDLCLD RVRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL ISQIISSLTT SLRFDGAINV DITEFQTNLV PYPRIHFMLS SYAPVISAAK AYHEQLSVPE ITNAVFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVATIKTKRT VQFVDWCPTG FKCGINYQPP SVVPGGDLAK VQRAVCMISN NTAVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGA EDDEEGEDY

Best Arabidopsis Sequence Match ( AT5G19770.1 )
(BLAST)

001: MREIISIHIG QAGIQVGNSC WELYCLEHGI QPDGMMPSDT TVGVAHDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTV GKEIVDLCLD RVRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL ISQIISSLTT SLRFDGAINV DITEFQTNLV PYPRIHFMLS SYAPVISAAK AYHEQLSVPE ITNAVFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT VQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN NTAVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEEDEGEDY

Arabidopsis Description

TUBA3Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A178UTQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.