CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 4
extracellular 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 19658398

msms PMID: 19658398 doi

S Komatsu, T Wada, Y Abaléa, MZ Nouri, Y Nanjo, N Nakayama, S Shimamura, R Yamamoto, T Nakamura, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66728	Soybean	nucleus	98.89	99.11
VIT_08s0040g00980.t01	Wine grape	cytosol	96.89	97.54
AT5G12250.1	Thale cress	cytosol	96.67	96.88
Bra008903.1-P	Field mustard	cytosol	96.22	96.65
GSMUA_Achr6P08450_001	Banana	cytosol	83.11	96.64
GSMUA_Achr6P16040_001	Banana	cytosol	83.56	96.16
KRH58404	Soybean	nucleus	92.89	94.57
KRG91525	Soybean	nucleus	94.0	94.42
KRH35301	Soybean	nucleus	94.0	94.42
KRH11812	Soybean	nucleus	93.56	94.39
KRH36829	Soybean	nucleus	93.33	94.17
KRH75786	Soybean	nucleus	93.78	93.99
KRH65977	Soybean	nucleus	93.78	93.99
CDX69693	Canola	cytosol	96.22	93.93
KRH42279	Soybean	cytosol	92.44	93.91
KRH51701	Soybean	nucleus	92.67	93.08
KRH05958	Soybean	nucleus	92.67	92.87
KRH61035	Soybean	nucleus	92.44	92.65
KRH41834	Soybean	cytosol	91.33	92.36
KRH60536	Soybean	endoplasmic reticulum	91.11	92.13
KRH41169	Soybean	cytosol	90.44	91.46
KRH59870	Soybean	endoplasmic reticulum	90.44	91.26
KRH17435	Soybean	nucleus	92.67	91.25
CDX97180	Canola	cytosol	96.22	90.02
KRH04356	Soybean	cytosol	26.67	47.81
KRH35640	Soybean	cytosol, nucleus	42.89	42.98
KRG91143	Soybean	nucleus	42.67	42.76
KRH58942	Soybean	nucleus	42.44	42.54
KRH42841	Soybean	cytosol, nucleus	42.44	42.44
KRH06693	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	41.78	42.44
KRH77187	Soybean	endoplasmic reticulum	42.44	42.35
KRH58181	Soybean	nucleus	42.22	42.22
KRH28301	Soybean	cytosol, endoplasmic reticulum	42.22	42.13
KRG94842	Soybean	cytosol, endoplasmic reticulum, mitochondrion	42.22	42.13
KRH52851	Soybean	cytosol, nucleus	42.22	42.04
KRH62139	Soybean	nucleus	42.22	42.04
KRH08505	Soybean	cytosol, endoplasmic reticulum, nucleus	41.11	41.67
KRH04357	Soybean	cytosol	13.33	35.29
KRG97131	Soybean	cytosol	34.67	32.91
KRH68880	Soybean	endoplasmic reticulum	34.67	32.91

Protein Annotations

Gene3D:1.10.287.600	EntrezGene:100798849	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	EMBL:ACUP02012075
InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin	ncoils:Coil	EnsemblPlantsGene:GLYMA_19G127700	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874
GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
UniProt:I1N8P5	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	EnsemblPlants:KRG95065	ProteinID:KRG95065
ProteinID:KRG95065.1	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227
ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF106	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490
SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf
InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000233E5E5	SEG:seg	:

Description

hypothetical protein

Coordinates

chr19:+:38632391..38635221

Molecular Weight (calculated)

50549.6 Da

IEP (calculated)

4.437

GRAVY (calculated)

-0.381

Length

450 amino acids

Sequence
(BLAST)

001: MREILHVQGG QCGNQIGSKF WEVVCDEHGI DPTGKYVGNS DLQLERVNVY YNEASCGRFV PRAVLMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIAPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA EDEGEYEDEE EEDGEADDHM

Best Arabidopsis Sequence Match ( AT5G12250.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVCDEHGI DPTGRYVGNS DLQLERVNVY YNEASCGRYV PRAILMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIAPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEGEYEEDE DEEEILDHE

Arabidopsis Description

TUBB6Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UPR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.