CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 4
extracellular 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41834	Soybean	cytosol	99.1	99.1
GSMUA_Achr3P18460_001	Banana	cytosol	80.67	93.01
Os01t0282800-02	Rice	plasma membrane	93.03	92.62
KXG32297	Sorghum	cytosol	92.58	92.38
PGSC0003DMT400014466	Potato	cytosol	58.2	92.17
Os01t0805900-01	Rice	plasma membrane	92.58	92.17
TraesCS3B01G363500.1	Wheat	golgi, unclear	92.58	92.17
VIT_17s0000g02450.t01	Wine grape	cytosol	92.13	92.13
KRH36829	Soybean	nucleus	92.13	91.93
KRH11812	Soybean	nucleus	91.91	91.7
Solyc03g118760.2.1	Tomato	nucleus	91.01	91.42
KRH58404	Soybean	nucleus	90.79	91.4
TraesCS3A01G333300.1	Wheat	cytosol	92.58	91.35
KRH66728	Soybean	nucleus	92.13	91.31
KRH42279	Soybean	cytosol	90.79	91.2
KRG95065	Soybean	plasma membrane	92.13	91.11
KRH65977	Soybean	nucleus	91.46	90.65
KRH75786	Soybean	nucleus	91.46	90.65
KRH35301	Soybean	nucleus	90.56	89.96
KRG91525	Soybean	nucleus	90.56	89.96
KRH05958	Soybean	nucleus	90.34	89.53
KRH51701	Soybean	nucleus	89.89	89.29
KRH41169	Soybean	cytosol	88.76	88.76
KRH61035	Soybean	nucleus	89.44	88.64
KRH59870	Soybean	endoplasmic reticulum	88.31	88.12
KRH17435	Soybean	nucleus	90.34	87.97
TraesCS3D01G326900.1	Wheat	plastid	92.58	82.57
HORVU3Hr1G078940.1	Barley	mitochondrion	92.58	81.91
KRH04356	Soybean	cytosol	26.97	47.81
KRG91143	Soybean	nucleus	42.92	42.54
KRH62139	Soybean	nucleus	43.15	42.48
KRH52851	Soybean	cytosol, nucleus	43.15	42.48
KRH35640	Soybean	cytosol, nucleus	42.7	42.32
KRH28301	Soybean	cytosol, endoplasmic reticulum	42.25	41.69
KRH77187	Soybean	endoplasmic reticulum	42.25	41.69
KRH58181	Soybean	nucleus	42.02	41.56
KRH06693	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	41.35	41.53
KRH08505	Soybean	cytosol, endoplasmic reticulum, nucleus	41.35	41.44
KRH58942	Soybean	nucleus	41.8	41.43
KRH42841	Soybean	cytosol, nucleus	41.8	41.33
KRG94842	Soybean	cytosol, endoplasmic reticulum, mitochondrion	41.57	41.02
KRH04357	Soybean	cytosol	12.58	32.94
KRH68880	Soybean	endoplasmic reticulum	34.16	32.07
KRG97131	Soybean	cytosol	34.16	32.07

Protein Annotations

Gene3D:1.10.287.600	EntrezGene:100801893	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	EMBL:ACUP02003367
InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin	ncoils:Coil	EnsemblPlantsGene:GLYMA_05G246100	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874
GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
UniProt:I1K5C2	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	EnsemblPlants:KRH60536	ProteinID:KRH60536
ProteinID:KRH60536.1	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227
ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF249	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490
SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf
InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000233A9B8	SEG:seg	:

Description

hypothetical protein

Coordinates

chr5:+:41987169..41988796

Molecular Weight (calculated)

49626.5 Da

IEP (calculated)

4.500

GRAVY (calculated)

-0.350

Length

445 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGTKF WEVVCDEHGI DPTGQYVGNS ELQLERVNVY YNEGSNGRYV PRAVLMDLEP GTMDAARTGP YGQIFRPDNF VFGQSGAGNN
101: FAKGHYTEGA ELIDSVLDVV RKEVENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLATP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQN YRALSVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAVFRGK MSTKEVDEQM LSVQNKNSSY FVEWIPNNVK SSVCDIPPRG LSMASTFVGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDSAT DEDGDSEEEG EGAES

Best Arabidopsis Sequence Match ( AT2G29550.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVNLEHGI DQTGRYVGDS ELQLERVNVY YNEASCGRYV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLSTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRNLTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGEYEEEE AEYEQEETY

Arabidopsis Description

TUBB7Tubulin beta-7 chain [Source:UniProtKB/Swiss-Prot;Acc:P29515]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.