Factsheet for Os01t0805900-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 4
extracellular 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
plasma membrane: 19502382
plastid: 27992503
plasma membrane: 28056797

msms PMID: 19502382 doi

M Fujiwara, S Hamada, M Hiratsuka, Y Fukao, T Kawasaki, K Shimamoto

Laboratory of Plant Protein Analysis, Plant Education Unit, Nara Institute of Science and Technology, Takayama, Ikoma, Japan.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G363500.1	Wheat	golgi, unclear	98.21	98.21
Os01t0282800-02	Rice	plasma membrane	97.99	97.99
KXG32297	Sorghum	cytosol	97.76	97.98
PGSC0003DMT400072466	Potato	cytosol	97.54	97.54
Os05t0413200-01	Rice	plasma membrane	96.87	97.52
TraesCS3A01G333300.1	Wheat	cytosol	98.21	97.34
Solyc10g080940.1.1	Tomato	nucleus	97.54	96.46
GSMUA_Achr3P18460_001	Banana	cytosol	83.22	96.37
Os03t0105600-01	Rice	plasma membrane	95.97	95.97
VIT_17s0000g02450.t01	Wine grape	cytosol	95.3	95.73
Os02t0167300-01	Rice	plasma membrane	94.85	94.85
Os06t0671900-01	Rice	plasma membrane	94.63	94.84
Os03t0780600-01	Rice	plastid	94.18	94.82
KRH41834	Soybean	cytosol	92.39	92.81
KRH60536	Soybean	endoplasmic reticulum	92.17	92.58
Os03t0661300-01	Rice	plasma membrane	91.72	91.93
TraesCS3D01G326900.1	Wheat	plastid	98.21	87.98
HORVU3Hr1G078940.1	Barley	mitochondrion	98.43	87.48
Os11t0247300-01	Rice	plasma membrane	42.51	42.13
Os03t0726100-01	Rice	nucleus	42.51	42.13
Os07t0574800-02	Rice	plasma membrane	41.83	41.56
Os03t0219300-01	Rice	cytosol, plasma membrane, plastid	41.39	41.2
Os05t0156600-01	Rice	cytosol	34.68	33.05
Os03t0780800-01	Rice	cytosol	2.68	5.06

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	EMBL:AK072502	ProteinID:BAB92274.1
ProteinID:BAF06479.1	ProteinID:BAS74833.1	InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin	ncoils:Coil	EMBL:D30716
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	EMBL:L19598
EnsemblPlantsGene:Os01g0805900	EnsemblPlants:Os01t0805900-01	UniProt:P45960	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161
PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF106	SMART:SM00864
SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom
InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0000001738
EMBL:X78143	SEG:seg	:	:	:	:

Description

BETA-TUBULIN 4Tubulin beta-2 chain (Beta-2 tubulin). (Os01t0805900-01)

Coordinates

chr1:+:34167936..34171573

Molecular Weight (calculated)

50292.4 Da

IEP (calculated)

4.478

GRAVY (calculated)

-0.381

Length

447 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCDEHGI DPTGRYTGNS DLQLERVNVY YNEASCGRFV PRAVLMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIPPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGEYEDEE QQEADDM

Best Arabidopsis Sequence Match ( AT5G12250.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVCDEHGI DPTGRYVGNS DLQLERVNVY YNEASCGRYV PRAILMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIAPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEGEYEEDE DEEEILDHE

Arabidopsis Description

TUBB6Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UPR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.