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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • cytosol 5
  • extracellular 1
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, extracellular, mitochondrion
BaCelLo:cytosol
EpiLoc:extracellular
MultiLoc:cytosol
Plant-mPloc:cytosol, mitochondrion
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
nucleus: 25464976
plastid: 26371478
unclear: 26455813
nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400072466 Potato cytosol 98.23 99.33
KXG32297 Sorghum cytosol 97.35 98.65
Os01t0282800-02 Rice plasma membrane 97.35 98.43
TraesCS3B01G363500.1 Wheat golgi, unclear 96.68 97.76
Os01t0805900-01 Rice plasma membrane 96.46 97.54
TraesCS3A01G333300.1 Wheat cytosol 96.68 96.9
Solyc03g025730.2.1 Tomato nucleus 94.03 95.51
Solyc06g035970.2.1 Tomato nucleus 93.58 94.63
Solyc10g086760.1.1 Tomato nucleus 93.58 94.42
Solyc06g076640.2.1 Tomato nucleus 93.58 93.58
Solyc10g085020.1.1 Tomato nucleus 93.81 93.39
Solyc03g118760.2.1 Tomato nucleus 91.37 93.23
Solyc04g081490.2.1 Tomato nucleus 92.7 92.9
Solyc12g089310.1.1 Tomato nucleus 91.37 91.57
Solyc06g005910.2.1 Tomato cytosol, nucleus, unclear 93.14 88.08
TraesCS3D01G326900.1 Wheat plastid 96.68 87.58
HORVU3Hr1G078940.1 Barley mitochondrion 96.46 86.68
Solyc04g077020.2.1 Tomato cytosol, extracellular, nucleus, plastid 43.14 43.33
Solyc08g006890.2.1 Tomato cytosol 42.26 42.35
Solyc02g087880.2.1 Tomato cytosol, unclear 42.04 42.22
Solyc02g091870.2.1 Tomato cytosol, unclear 41.81 41.91
Solyc12g088180.1.1 Tomato cytosol 17.26 34.36
Solyc03g111380.2.1 Tomato cytosol 34.51 32.91
Protein Annotations
Gene3D:1.10.287.600MapMan:20.1.1.2Gene3D:3.30.1330.20Gene3D:3.40.50.1440InterPro:Beta_tubulinncoils:Coil
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0003924GO:GO:0005198GO:GO:0005200
GO:GO:0005488GO:GO:0005525GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005856
GO:GO:0005874GO:GO:0007010GO:GO:0007017GO:GO:0008150GO:GO:0009987GO:GO:0016043
GO:GO:0016787InterPro:IPR023123InterPro:IPR036525InterPro:IPR037103UniProt:K4D2Y1PFAM:PF00091
PFAM:PF03953PRINTS:PR01161PRINTS:PR01163ScanProsite:PS00227PANTHER:PTHR11588PANTHER:PTHR11588:SF106
SMART:SM00864SMART:SM00865SUPFAM:SSF52490SUPFAM:SSF55307EnsemblPlantsGene:Solyc10g080940.1EnsemblPlants:Solyc10g080940.1.1
InterPro:Tub_FtsZ_CInterPro:TubulinInterPro:Tubulin/FtsZ_2-layer-sand-domInterPro:Tubulin/FtsZ_C_sfInterPro:Tubulin/FtsZ_GTPase_sfInterPro:Tubulin_C
InterPro:Tubulin_CSInterPro:Tubulin_FtsZ_GTPaseUniParc:UPI0002769778SEG:seg::
Description
Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:K4D2Y1]
Coordinates
chr10:-:62129286..62131869
Molecular Weight (calculated)
50962.2 Da
IEP (calculated)
4.489
GRAVY (calculated)
-0.375
Length
452 amino acids
Sequence
(BLAST)
001: MFSEKMREIL HIQGGQCGNQ IGSKFWEVVC DEHGIDPTGR YVGTSDLQLE RVNVYYNEAS CGRFVPRAVL MDLEPGTMDS VRTGPYGQIF RPDNFVFGQS
101: GAGNNWAKGH YTEGAELIDS VLDVVRKEAE NCDCLQGFQV CHSLGGGTGS GMGTLLISKI REEYPDRMML TFSVFPSPKV SDTVVEPYNA TLSVHQLVEN
201: ADECMVLDNE ALYDICFRTL KLTTPSFGDL NHLISATMSG VTCCLRFPGQ LNSDLRKLAV NLIPFPRLHF FMVGFAPLTS RGSQQYRALT VPELTQQMWD
301: AKNMMCAADP RHGRYLTASA MFRGKMSTKE VDEQMINVQN KNSSYFVEWI PNNVKSSVCD IPPRGLSMAS TFIGNSTSIQ EMFRRVSEQF TAMFRRKAFL
401: HWYTGEGMDE MEFTEAESNM NDLVSEYQQY QDATADEEGE YEDEDYDVQE EN
Best Arabidopsis Sequence Match ( AT5G12250.1 )
(BLAST)
001: MREILHIQGG QCGNQIGSKF WEVVCDEHGI DPTGRYVGNS DLQLERVNVY YNEASCGRYV PRAILMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIAPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEGEYEEDE DEEEILDHE
Arabidopsis Description
TUBB6Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UPR2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.