Factsheet for Solyc10g086760.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g062540.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62690.1	Solyc02g062540.2.1	AT3G50960.1	18390592
AT5G62700.1	Solyc02g062540.2.1	AT3G50960.1	18390592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049212	Potato	cytosol	99.11	99.11
CDY67078	Canola	cytosol	85.94	97.72
Solyc10g085020.1.1	Tomato	nucleus	97.54	96.26
VIT_08s0007g01630.t01	Wine grape	cytosol	95.98	96.2
Solyc03g025730.2.1	Tomato	nucleus	94.87	95.51
Bra010114.1-P	Field mustard	cytosol	95.76	95.33
Bra019493.1-P	Field mustard	cytosol	95.76	95.33
CDX84345	Canola	cytosol	95.76	95.33
CDX86102	Canola	plasma membrane	95.76	95.33
CDY00319	Canola	cytosol	95.76	95.33
CDY38073	Canola	cytosol	95.76	95.33
Bra018184.1-P	Field mustard	cytosol	95.54	95.32
Solyc06g035970.2.1	Tomato	nucleus	95.09	95.3
VIT_06s0004g05870.t01	Wine grape	cytosol	94.87	95.29
AT5G62700.1	Thale cress	cytosol	95.54	95.11
AT5G62690.1	Thale cress	cytosol	95.54	95.11
Bra033796.1-P	Field mustard	cytosol	95.31	95.1
CDY21784	Canola	cytosol	90.62	95.08
CDX99087	Canola	cytosol	90.62	95.08
Zm00001d040509_P001	Maize	cytosol	47.1	95.05
Solyc06g076640.2.1	Tomato	nucleus	94.87	94.03
Solyc10g080940.1.1	Tomato	nucleus	94.42	93.58
Solyc04g081490.2.1	Tomato	nucleus	93.3	92.68
Solyc12g089310.1.1	Tomato	nucleus	92.41	91.8
Solyc03g118760.2.1	Tomato	nucleus	90.4	91.42
Zm00001d008216_P002	Maize	cytosol	48.21	90.38
Solyc06g005910.2.1	Tomato	cytosol, nucleus, unclear	93.75	87.87
Solyc04g077020.2.1	Tomato	cytosol, extracellular, nucleus, plastid	42.19	42.0
Solyc08g006890.2.1	Tomato	cytosol	42.19	41.91
Solyc02g091870.2.1	Tomato	cytosol, unclear	41.96	41.69
Solyc02g087880.2.1	Tomato	cytosol, unclear	41.74	41.56
Solyc12g088180.1.1	Tomato	cytosol	17.86	35.24
Solyc03g111380.2.1	Tomato	cytosol	35.49	33.54

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198
GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103
UniProt:K4D4A7	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227
ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF264	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490
SUPFAM:SSF55307	EnsemblPlantsGene:Solyc10g086760.1	EnsemblPlants:Solyc10g086760.1.1	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom
InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000276962E
SEG:seg	:	:	:	:	:

Description

Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:K4D4A7]

Coordinates

chr10:-:65483563..65485088

Molecular Weight (calculated)

50398.5 Da

IEP (calculated)

4.453

GRAVY (calculated)

-0.369

Length

448 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DSTGRYSGDS DLQLERINVY YNEATCGRFV PRAVLMDLEP GTMDSIRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEGEYYEEE DEEDVNEN

Best Arabidopsis Sequence Match ( AT5G62700.1 )
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DPTGRYTGDS DLQLERINVY YNEASCGRFV PRAVLMDLEP GTMDSLRSGP YGQTFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRSLTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGDYEDEE EGEYQQEEEY

Arabidopsis Description

TUBB3Tubulin beta-2 chain [Source:UniProtKB/Swiss-Prot;Acc:Q56YW9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.