Factsheet for Solyc02g087880.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, cytosol

Predictor Summary:

cytosol 4
golgi 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003336	Potato	cytosol	100.0	100.0
Solyc04g077020.2.1	Tomato	cytosol, extracellular, nucleus, plastid	97.11	97.11
CDY66630	Canola	cytosol	92.89	96.09
Solyc08g006890.2.1	Tomato	cytosol	96.22	96.01
CDY29334	Canola	cytosol	91.78	95.82
AT4G14960.2	Thale cress	cytosol	95.78	95.78
CDY50974	Canola	cytosol	95.78	95.78
CDY28123	Canola	cytosol	95.78	95.78
KRH35640	Soybean	cytosol, nucleus	95.56	95.77
AT1G50010.1	Thale cress	cytosol	95.56	95.56
CDY45043	Canola	cytosol	95.56	95.56
CDY03583	Canola	cytosol	95.56	95.56
AT1G04820.1	Thale cress	cytosol	95.56	95.56
Bra018825.1-P	Field mustard	cytosol	95.56	95.56
Bra014232.1-P	Field mustard	cytosol	95.56	95.56
KRG91143	Soybean	nucleus	95.33	95.55
CDY25017	Canola	cytosol	86.67	95.12
Bra039648.1-P	Field mustard	cytosol	95.11	95.11
Solyc02g091870.2.1	Tomato	cytosol, unclear	93.33	93.13
Solyc12g088180.1.1	Tomato	cytosol	46.89	92.95
Solyc12g089310.1.1	Tomato	nucleus	42.67	42.57
Solyc10g080940.1.1	Tomato	nucleus	42.22	42.04
Solyc03g025730.2.1	Tomato	nucleus	41.56	42.02
Solyc04g081490.2.1	Tomato	nucleus	42.0	41.91
Solyc06g035970.2.1	Tomato	nucleus	41.56	41.83
Solyc06g076640.2.1	Tomato	nucleus	42.0	41.81
Solyc03g118760.2.1	Tomato	nucleus	41.11	41.76
Solyc10g086760.1.1	Tomato	nucleus	41.56	41.74
Solyc10g085020.1.1	Tomato	nucleus	41.56	41.19
Solyc06g005910.2.1	Tomato	cytosol, nucleus, unclear	42.44	39.96
Solyc03g111380.2.1	Tomato	cytosol	30.44	28.9

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Alpha_tubulin	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	UniProt:K4BBU4
PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01162	ScanProsite:PS00227	PANTHER:PTHR11588
PANTHER:PTHR11588:SF254	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	EnsemblPlantsGene:Solyc02g087880.2
EnsemblPlants:Solyc02g087880.2.1	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf
InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI00027682E9	SEG:seg	:

Description

Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:K4BBU4]

Coordinates

chr2:+:50152597..50154449

Molecular Weight (calculated)

49665.9 Da

IEP (calculated)

4.732

GRAVY (calculated)

-0.178

Length

450 amino acids

Sequence
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI KPDGQMPGDV TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFHA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: AILLDNEAIY DICRKSLDIE RPTYTNLNRL ISQVISSLTA SLRFDGALNV DVNEFQTNLV PYPRIHFMLS SYAPVISAEK AYHEQLSVAE ITNTAFEPSS
301: MMVKCDPRHG KYMACCLMYR GDVVPKDVNA AVATIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGCESG DGEDDENEEY

Best Arabidopsis Sequence Match ( AT4G14960.2 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPGDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLNIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA6Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A178UXP7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.