Factsheet for Bra039648.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25017	Canola	cytosol	90.67	99.51
Bra014232.1-P	Field mustard	cytosol	99.33	99.33
CDY66630	Canola	cytosol	96.0	99.31
Bra018825.1-P	Field mustard	cytosol	99.11	99.11
KRH35640	Soybean	cytosol, nucleus	96.0	96.21
KRG91143	Soybean	nucleus	95.78	95.99
Solyc04g077020.2.1	Tomato	cytosol, extracellular, nucleus, plastid	95.78	95.78
Solyc08g006890.2.1	Tomato	cytosol	95.78	95.57
PGSC0003DMT400022574	Potato	cytosol	95.56	95.56
Solyc02g087880.2.1	Tomato	cytosol, unclear	95.11	95.11
PGSC0003DMT400003336	Potato	cytosol	95.11	95.11
PGSC0003DMT400030110	Potato	cytosol	95.11	94.9
Bra002261.1-P	Field mustard	cytosol	92.0	92.0
Bra020062.1-P	Field mustard	cytosol	92.0	92.0
Bra006517.1-P	Field mustard	cytosol	90.89	90.89
Bra020061.1-P	Field mustard	cytosol	90.44	90.44
Bra002260.1-P	Field mustard	cytosol	82.22	90.24
PGSC0003DMT400085117	Potato	cytosol	56.22	88.15
Bra020572.1-P	Field mustard	cytosol	66.44	63.89
Bra027544.1-P	Field mustard	cytosol	42.67	43.15
Bra039506.1-P	Field mustard	cytosol	42.67	43.05
Bra039987.1-P	Field mustard	cytosol	42.89	42.98
Bra018184.1-P	Field mustard	cytosol	42.89	42.98
Bra019493.1-P	Field mustard	cytosol	42.89	42.89
Bra010114.1-P	Field mustard	cytosol	42.89	42.89
Bra020912.1-P	Field mustard	cytosol	42.44	42.83
Bra033796.1-P	Field mustard	cytosol	42.67	42.76
Bra018379.1-P	Field mustard	cytosol	42.67	42.76
Bra033737.1-P	Field mustard	cytosol	42.22	42.7
Bra008903.1-P	Field mustard	cytosol	42.44	42.63
Bra015815.1-P	Field mustard	cytosol	42.22	42.51
Bra038795.1-P	Field mustard	cytosol	42.0	42.47
Bra009710.1-P	Field mustard	cytosol	42.22	42.32
Bra013481.1-P	Field mustard	cytosol	41.78	42.15
Bra005395.1-P	Field mustard	cytosol	37.33	41.69
Bra007622.1-P	Field mustard	cytosol	30.67	29.18

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Alpha_tubulin	EnsemblPlantsGene:Bra039648
EnsemblPlants:Bra039648.1	EnsemblPlants:Bra039648.1-P	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010
GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123
InterPro:IPR036525	InterPro:IPR037103	UniProt:M4FEX6	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161
PRINTS:PR01162	ScanProsite:PS00227	PANTHER:PTHR11588	PANTHER:PTHR11588:SF254	SMART:SM00864	SMART:SM00865
SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf
InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000253EAA6	SEG:seg

Description

AT1G04820 (E=5e-243) TUA4 | TUA4; structural constituent of cytoskeleton

Coordinates

chrScaffold000172:-:212440..214331

Molecular Weight (calculated)

49635.7 Da

IEP (calculated)

4.733

GRAVY (calculated)

-0.211

Length

450 amino acids

Sequence
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNRVLS PHSLLEHTDV
201: SILLDNEAIY DICRRSLNIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Best Arabidopsis Sequence Match ( AT1G04820.1 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLSIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA4Tubulin alpha-2 chain [Source:UniProtKB/Swiss-Prot;Acc:B9DGT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.