Factsheet for Bra039987.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51360	Canola	cytosol	99.78	99.78
CDX97877	Canola	cytosol	99.78	99.78
Bra018379.1-P	Field mustard	cytosol	99.55	99.55
AT2G29550.1	Thale cress	cytosol	97.55	97.55
Bra018184.1-P	Field mustard	cytosol	95.99	95.99
Bra010114.1-P	Field mustard	cytosol	95.99	95.78
Bra019493.1-P	Field mustard	cytosol	95.99	95.78
Bra033796.1-P	Field mustard	cytosol	95.77	95.77
Bra009710.1-P	Field mustard	cytosol	95.77	95.77
Bra008903.1-P	Field mustard	cytosol	94.65	94.87
Bra015815.1-P	Field mustard	cytosol	93.32	93.74
Bra020912.1-P	Field mustard	cytosol	91.98	92.6
Bra038795.1-P	Field mustard	cytosol	91.31	92.13
Bra027544.1-P	Field mustard	cytosol	90.87	91.69
Bra033737.1-P	Field mustard	cytosol	90.87	91.69
Bra039506.1-P	Field mustard	cytosol	90.87	91.48
Bra013481.1-P	Field mustard	cytosol	90.2	90.81
Bra005395.1-P	Field mustard	cytosol	77.51	86.35
Bra014232.1-P	Field mustard	cytosol	42.98	42.89
Bra039648.1-P	Field mustard	cytosol	42.98	42.89
Bra018825.1-P	Field mustard	cytosol	42.76	42.67
Bra020062.1-P	Field mustard	cytosol	42.54	42.44
Bra020061.1-P	Field mustard	cytosol	42.32	42.22
Bra006517.1-P	Field mustard	cytosol	42.32	42.22
Bra002261.1-P	Field mustard	cytosol	42.09	42.0
Bra002260.1-P	Field mustard	cytosol	37.42	40.98
Bra007622.1-P	Field mustard	cytosol	35.41	33.62
Bra020572.1-P	Field mustard	cytosol	29.18	27.99

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin
EnsemblPlantsGene:Bra039987	EnsemblPlants:Bra039987.1	EnsemblPlants:Bra039987.1-P	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874
GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	UniProt:M4FFW3	PFAM:PF00091	PFAM:PF03953
PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF264
SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin
InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase
UniParc:UPI000254440E	SEG:seg	:	:	:	:

Description

AT2G29550 (E=2e-240) TUB7 | TUB7; structural constituent of cytoskeleton

Coordinates

chrA04:-:13237670..13239291

Molecular Weight (calculated)

50635.6 Da

IEP (calculated)

4.459

GRAVY (calculated)

-0.429

Length

449 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVCAEHGI DQTGRYQGDS DLQLDRVNVY YNEASCGRYV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLSTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRNLTVPELT QQMWDSKNMM
301: SAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA EEEGEYEDEE AEYEQEEGY

Best Arabidopsis Sequence Match ( AT2G29550.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVNLEHGI DQTGRYVGDS ELQLERVNVY YNEASCGRYV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLSTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRNLTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGEYEEEE AEYEQEETY

Arabidopsis Description

TUBB7Tubulin beta-7 chain [Source:UniProtKB/Swiss-Prot;Acc:P29515]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.