Factsheet for Bra005395.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
extracellular 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d036626_P001	Maize	cytosol	54.09	96.04
Zm00001d046996_P001	Maize	cytosol	54.34	94.81
Zm00001d013139_P001	Maize	cytosol	64.27	88.4
Zm00001d034022_P001	Maize	cytosol	56.82	87.4
CDY31638	Canola	cytosol	91.32	82.88
CDX84283	Canola	cytosol	91.32	82.51
KRH58404	Soybean	nucleus	88.83	81.0
VIT_10s0003g05320.t01	Wine grape	cytosol	89.33	80.9
Zm00001d015348_P002	Maize	plastid	89.08	80.86
KRH36829	Soybean	nucleus	89.33	80.72
Os06t0671900-01	Rice	plasma membrane	89.33	80.72
EES04582	Sorghum	cytosol	89.33	80.72
KRH42279	Soybean	cytosol	88.59	80.59
Os02t0167300-01	Rice	plasma membrane	89.33	80.54
KRH11812	Soybean	nucleus	89.08	80.49
HORVU6Hr1G027620.1	Barley	plasma membrane	89.08	80.49
TraesCS6D01G130500.2	Wheat	golgi	88.83	80.45
Os03t0780600-01	Rice	plastid	88.59	80.41
TraesCS6B01G169300.1	Wheat	cytosol	88.59	80.41
EER90205	Sorghum	cytosol	88.83	80.27
EER93354	Sorghum	cytosol	88.59	80.22
TraesCS7A01G466600.1	Wheat	golgi	88.34	79.82
TraesCS7D01G454200.1	Wheat	cytosol	88.34	79.82
TraesCS5A01G416400.1	Wheat	cytosol	87.84	79.73
HORVU7Hr1G107100.2	Barley	cytosol, nucleus	88.09	79.6
TraesCS5D01G424100.1	Wheat	cytosol	87.84	79.55
TraesCS5B01G418700.1	Wheat	golgi	87.84	79.55
Bra015815.1-P	Field mustard	cytosol	87.59	78.97
Bra020912.1-P	Field mustard	cytosol	87.34	78.92
Bra038795.1-P	Field mustard	cytosol	86.6	78.43
Bra009710.1-P	Field mustard	cytosol	87.1	78.17
GSMUA_Achr5P26680_001	Banana	cytosol	75.19	78.09
Bra019493.1-P	Field mustard	cytosol	87.1	78.0
Bra010114.1-P	Field mustard	cytosol	87.1	78.0
Bra033796.1-P	Field mustard	cytosol	86.85	77.95
Bra018379.1-P	Field mustard	cytosol	86.85	77.95
Bra018184.1-P	Field mustard	cytosol	86.85	77.95
Bra008903.1-P	Field mustard	cytosol	86.6	77.9
Bra027544.1-P	Field mustard	cytosol	85.86	77.75
GSMUA_Achr8P07060_001	Banana	cytosol	74.94	77.64
Bra039506.1-P	Field mustard	cytosol	85.86	77.58
Bra039987.1-P	Field mustard	cytosol	86.35	77.51
GSMUA_Achr2P01410_001	Banana	cytosol	74.94	77.44
Bra013481.1-P	Field mustard	cytosol	85.61	77.35
GSMUA_Achr5P00290_001	Banana	cytosol	75.19	77.1
Bra033737.1-P	Field mustard	cytosol	85.11	77.08
GSMUA_Achr11P...	Banana	cytosol	66.75	76.86
GSMUA_Achr3P23490_001	Banana	cytosol	70.97	76.68
GSMUA_Achr6P04600_001	Banana	cytosol	79.4	75.65
HORVU5Hr1G100900.2	Barley	cytosol	87.84	69.96
GSMUA_Achr6P19990_001	Banana	cytosol	71.46	69.57
Bra039648.1-P	Field mustard	cytosol	41.69	37.33
Bra014232.1-P	Field mustard	cytosol	41.69	37.33
Bra020062.1-P	Field mustard	cytosol	41.44	37.11
Bra020061.1-P	Field mustard	cytosol	41.44	37.11
Bra018825.1-P	Field mustard	cytosol	41.44	37.11
Bra002261.1-P	Field mustard	cytosol	41.44	37.11
Bra006517.1-P	Field mustard	cytosol	41.19	36.89
Bra002260.1-P	Field mustard	cytosol	36.23	35.61
Bra007622.1-P	Field mustard	cytosol	33.0	28.12
Bra020572.1-P	Field mustard	cytosol	27.3	23.5

Protein Annotations

Gene3D:1.10.287.600	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	MapMan:35.1	InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin
EnsemblPlantsGene:Bra005395	EnsemblPlants:Bra005395.1	EnsemblPlants:Bra005395.1-P	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010
GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123
InterPro:IPR036525	InterPro:IPR037103	UniProt:M4CMF7	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161
PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF245	SMART:SM00864
SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom
InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0002547FFE
SEG:seg	:	:	:	:	:

Description

AT1G75780 (E=3e-115) TUB1 | TUB1; GTP binding / GTPase/ structural molecule

Coordinates

chrA05:+:5215124..5217323

Molecular Weight (calculated)

44971.5 Da

IEP (calculated)

5.156

GRAVY (calculated)

-0.373

Length

403 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVICNEHGI DPSGKYDGDS DLQLERINVY YNEASGGRYV PRAVLMDLEP GTMDSIRSGP FGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLATP TSQLRPPQAR GQPNPLPSSP LLHGRFRTSH IPRLPAIPRL ISPELTQQMW DAKNMMCAAD PRHGRYLTAS AMFRGKMSTK
301: EVDEQMINVQ NKNSSYFVEW IPNNVKSSVC DIPPKGLSMA STFVGNSTSI QEMFRRVSEQ FTAMFRRKAF LHWYTGEGMD EMEFTEAESN MNDLVIEGGS
401: YVA

Best Arabidopsis Sequence Match ( AT1G20010.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVICDEHGI DSTGRYSGDT ADLQLERINV YYNEASGGRY VPRAVLMDLE PGTMDSIRSG PFGQIFRPDN FVFGQSGAGN
101: NWAKGHYTEG AELIDAVLDV VRKEAENCDC LQGFQVCHSL GGGTGSGMGT LLISKIREEY PDRMMLTFSV FPSPKVSDTV VEPYNATLSV HQLVENADEC
201: MVLDNEALYD ICFRTLKLST PSFGDLNHLI SATMSGVTCS LRFPGQLNSD LRKLAVNLIP FPRLHFFMVG FAPLTSRGSQ QYISLTVPEL TQQMWDSKNM
301: MCAADPRHGR YLTASAIFRG QMSTKEVDEQ ILNIQNKNSS YFVEWIPNNV KSSVCDIPPK GLKMAATFVG NSTSIQEMFR RVSEQFTAMF RRKAFLHWYT
401: GEGMDEMEFT EAESNMNDLV AEYQQYQDAT ADEEGEYDVE EEEEGDYET

Arabidopsis Description

TUBB5Tubulin beta-5 chain [Source:UniProtKB/Swiss-Prot;Acc:P29513]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.