Factsheet for Bra039506.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra036844.1-P
Bra038875.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G44340.1	Bra036844.1-P	AT3G50960.1	18390592
AT5G44340.1	Bra038875.1-P	AT3G50960.1	18390592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14924	Canola	cytosol	100.0	100.0
CDX96965	Canola	cytosol	99.78	100.0
Bra027544.1-P	Field mustard	cytosol	99.78	100.0
AT5G44340.1	Thale cress	cytosol	98.43	98.87
Bra033737.1-P	Field mustard	cytosol	98.21	98.43
Bra020912.1-P	Field mustard	cytosol	95.96	95.96
GSMUA_Achr11P...	Banana	cytosol	74.89	95.43
Bra038795.1-P	Field mustard	cytosol	95.07	95.28
Bra013481.1-P	Field mustard	cytosol	94.84	94.84
KRH11812	Soybean	nucleus	94.39	94.39
KRH36829	Soybean	nucleus	94.17	94.17
EES04582	Sorghum	cytosol	94.17	94.17
KRH58404	Soybean	nucleus	93.27	94.12
Os06t0671900-01	Rice	plasma membrane	93.95	93.95
GSMUA_Achr5P26680_001	Banana	cytosol	81.61	93.81
VIT_10s0003g05320.t01	Wine grape	cytosol	93.5	93.71
TraesCS6B01G169300.1	Wheat	cytosol	93.27	93.69
GSMUA_Achr2P01410_001	Banana	cytosol	81.84	93.59
TraesCS6D01G130500.2	Wheat	golgi	93.27	93.48
KRH42279	Soybean	cytosol	92.83	93.45
Zm00001d036626_P001	Maize	cytosol	47.53	93.39
GSMUA_Achr8P07060_001	Banana	cytosol	81.39	93.32
EER90205	Sorghum	cytosol	93.27	93.27
HORVU6Hr1G027620.1	Barley	plasma membrane	93.05	93.05
Os03t0780600-01	Rice	plastid	92.6	93.02
Zm00001d015348_P002	Maize	plastid	92.6	93.02
Os02t0167300-01	Rice	plasma membrane	93.05	92.84
TraesCS7D01G454200.1	Wheat	cytosol	92.83	92.83
HORVU7Hr1G107100.2	Barley	cytosol, nucleus	92.83	92.83
TraesCS7A01G466600.1	Wheat	golgi	92.83	92.83
EER93354	Sorghum	cytosol	92.6	92.81
GSMUA_Achr3P23490_001	Banana	cytosol	77.58	92.76
TraesCS5D01G424100.1	Wheat	cytosol	92.38	92.58
TraesCS5B01G418700.1	Wheat	golgi	92.38	92.58
TraesCS5A01G416400.1	Wheat	cytosol	92.15	92.57
Zm00001d046996_P001	Maize	cytosol	47.76	92.21
Zm00001d013139_P001	Maize	cytosol	60.54	92.15
GSMUA_Achr5P00290_001	Banana	cytosol	81.17	92.11
Zm00001d034022_P001	Maize	cytosol	53.81	91.6
Bra019493.1-P	Field mustard	cytosol	92.15	91.33
Bra010114.1-P	Field mustard	cytosol	92.15	91.33
Bra018379.1-P	Field mustard	cytosol	91.93	91.31
Bra018184.1-P	Field mustard	cytosol	91.93	91.31
Bra015815.1-P	Field mustard	cytosol	91.48	91.28
Bra033796.1-P	Field mustard	cytosol	91.7	91.09
Bra009710.1-P	Field mustard	cytosol	91.7	91.09
Bra008903.1-P	Field mustard	cytosol	91.48	91.07
Bra039987.1-P	Field mustard	cytosol	91.48	90.87
GSMUA_Achr6P04600_001	Banana	cytosol	84.75	89.36
Bra005395.1-P	Field mustard	cytosol	77.58	85.86
GSMUA_Achr6P19990_001	Banana	cytosol	76.91	82.85
HORVU5Hr1G100900.2	Barley	cytosol	92.38	81.42
Bra014232.1-P	Field mustard	cytosol	43.05	42.67
Bra039648.1-P	Field mustard	cytosol	43.05	42.67
Bra018825.1-P	Field mustard	cytosol	42.83	42.44
Bra020062.1-P	Field mustard	cytosol	42.6	42.22
Bra020061.1-P	Field mustard	cytosol	42.38	42.0
Bra006517.1-P	Field mustard	cytosol	42.15	41.78
Bra002261.1-P	Field mustard	cytosol	42.15	41.78
Bra002260.1-P	Field mustard	cytosol	37.67	40.98
Bra007622.1-P	Field mustard	cytosol	36.32	34.25
Bra020572.1-P	Field mustard	cytosol	29.82	28.42

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin
EnsemblPlantsGene:Bra039506	EnsemblPlants:Bra039506.1	EnsemblPlants:Bra039506.1-P	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874
GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	UniProt:M4FEI5	PFAM:PF00091	PFAM:PF03953
PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF245
SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin
InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase
UniParc:UPI000253E9A2	SEG:seg	:	:	:	:

Description

AT5G44340 (E=5e-246) TUB4 | TUB4; structural constituent of cytoskeleton

Coordinates

chrScaffold000167:-:10976..12458

Molecular Weight (calculated)

49971.0 Da

IEP (calculated)

4.428

GRAVY (calculated)

-0.350

Length

446 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVICGEHGI DHTGQYVGDS PLQLERIDVY FNEASGGKYV PRAVLMDLEP GTMDSLRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENSDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLANP TFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YSALSVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAVFRGK LSTKEVDEQM MNIQNKNSSY FVEWIPNNVK SSVCDIAPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATA GEEEYEEEEE EEYDEA

Best Arabidopsis Sequence Match ( AT5G44340.1 )
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVICDEHGI DHTGQYVGDS PLQLERIDVY FNEASGGKYV PRAVLMDLEP GTMDSLRSGP FGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENSDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLANP TFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YSALSVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAVFRGK LSTKEVDEQM MNIQNKNSSY FVEWIPNNVK SSVCDIAPKG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATA GEEEYEEEEE EYET

Arabidopsis Description

TUBB4Tubulin beta-4 chain [Source:UniProtKB/Swiss-Prot;Acc:P24636]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.