Factsheet for Bra007622.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX71723	Canola	cytosol	100.0	100.0
CDY11370	Canola	cytosol	100.0	100.0
AT3G61650.1	Thale cress	cytosol	98.52	98.31
AT5G05620.1	Thale cress	cytosol	96.83	96.62
VIT_15s0046g01350.t01	Wine grape	cytosol	95.56	95.36
KRH68880	Soybean	endoplasmic reticulum	93.45	93.25
KRG97131	Soybean	cytosol	93.23	93.04
PGSC0003DMT400039263	Potato	cytosol	92.39	92.19
Solyc03g111380.2.1	Tomato	cytosol	92.18	91.98
Os05t0156600-01	Rice	cytosol	91.12	91.9
EES19069	Sorghum	cytosol	90.27	91.04
TraesCS1D01G107300.1	Wheat	cytosol	88.37	89.13
TraesCS1B01G124800.1	Wheat	cytosol	88.37	89.13
TraesCS1A01G099400.1	Wheat	cytosol	88.37	89.13
HORVU1Hr1G023030.2	Barley	cytosol	88.37	89.13
GSMUA_Achr1P14750_001	Banana	cytosol	89.43	88.49
Zm00001d035567_P001	Maize	nucleus	44.61	84.4
Zm00001d013636_P001	Maize	nucleus, plastid	41.65	75.19
Bra027544.1-P	Field mustard	cytosol	34.25	36.4
Bra039506.1-P	Field mustard	cytosol	34.25	36.32
Bra033737.1-P	Field mustard	cytosol	33.83	35.96
Bra015815.1-P	Field mustard	cytosol	33.62	35.57
Bra008903.1-P	Field mustard	cytosol	33.62	35.49
Bra039987.1-P	Field mustard	cytosol	33.62	35.41
Bra019493.1-P	Field mustard	cytosol	33.62	35.33
Bra010114.1-P	Field mustard	cytosol	33.62	35.33
Bra038795.1-P	Field mustard	cytosol	33.19	35.28
Bra020912.1-P	Field mustard	cytosol	33.19	35.2
Bra033796.1-P	Field mustard	cytosol	33.4	35.19
Bra018379.1-P	Field mustard	cytosol	33.4	35.19
Bra018184.1-P	Field mustard	cytosol	33.4	35.19
Bra009710.1-P	Field mustard	cytosol	33.19	34.97
Bra013481.1-P	Field mustard	cytosol	32.35	34.3
Bra005395.1-P	Field mustard	cytosol	28.12	33.0
Bra018825.1-P	Field mustard	cytosol	29.39	30.89
Bra014232.1-P	Field mustard	cytosol	29.39	30.89
Bra020061.1-P	Field mustard	cytosol	29.18	30.67
Bra006517.1-P	Field mustard	cytosol	29.18	30.67
Bra039648.1-P	Field mustard	cytosol	29.18	30.67
Bra002261.1-P	Field mustard	cytosol	28.96	30.44
Bra020062.1-P	Field mustard	cytosol	28.96	30.44
Bra002260.1-P	Field mustard	cytosol	24.95	28.78
Bra020572.1-P	Field mustard	cytosol	21.35	21.58

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.2.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	EnsemblPlantsGene:Bra007622	EnsemblPlants:Bra007622.1
EnsemblPlants:Bra007622.1-P	GO:GO:0000166	GO:GO:0000930	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0005874	GO:GO:0007017	GO:GO:0007020	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0031122	InterPro:Gamma_tubulin	InterPro:IPR023123	InterPro:IPR036525
InterPro:IPR037103	UniProt:M4CTS8	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01164
ScanProsite:PS00227	PANTHER:PTHR11588	PANTHER:PTHR11588:SF7	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490
SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf
InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000151E3F4	:	:

Description

AT3G61650 (E=2e-273) TUBG1 | TUBG1 (GAMMA-TUBULIN); GTP binding / GTPase/ structural molecule

Coordinates

chrA09:-:30083810..30086398

Molecular Weight (calculated)

53202.5 Da

IEP (calculated)

5.786

GRAVY (calculated)

-0.307

Length

473 amino acids

Sequence
(BLAST)

001: MPREIITLQV GQCGNQIGME FWKQLCLEHG ISKDGILEDF ATQGGDRKDV FFYQADDQHY IPRALLIDLE PRVINGIQNG DYRNLYNHEN IFVADHGGGA
101: GNNWASGYHQ GKGVEEEIMD MIDREADGSD SLEGFVLCHS IAGGTGSGMG SYLLETLNDR YSKKLVQTYS VFPNQMETSD VVVQPYNSLL TLKRLTLNAD
201: CVVVLDNTAL TRIAVERLHL TNPTFAQTNS LVSTVMSAST TTLRYPGYMN NDLVGLLASL IPTPRCHFLM TGYTPLTVER QANVIRKTTV LDVMRRLLQP
301: KNVMVSSYAR NKEASQAKYI SILNIIQGEV DPTQVHESLQ RIRERKLVNF IEWGPASIQV ALSKKSPYVQ TAHRVSGLML ASHTSIRHLF SKCLSQYDKL
401: RKKQAFLDNY RKFPMFDNDL SEFDEARDII ESLVDEYKAC ESPDYIKWGM EDPEQLVTGE GNASGVVDPR MAF

Best Arabidopsis Sequence Match ( AT3G61650.1 )
(BLAST)

001: MPREIITLQV GQCGNQIGME FWKQLCLEHG ISKDGILEDF ATQGGDRKDV FFYQADDQHY IPRALLIDLE PRVINGIQNG DYRNLYNHEN IFVADHGGGA
101: GNNWASGYHQ GKGVEEEIMD MIDREADGSD SLEGFVLCHS IAGGTGSGMG SYLLETLNDR YSKKLVQTYS VFPNQMETSD VVVQPYNSLL TLKRLTLNAD
201: CVVVLDNTAL GRIAVERLHL TNPTFAQTNS LVSTVMSAST TTLRYPGYMN NDLVGLLASL IPTPRCHFLM TGYTPLTVER QANVIRKTTV LDVMRRLLQT
301: KNIMVSSYAR NKEASQAKYI SILNIIQGEV DPTQVHESLQ RIRERKLVNF IEWGPASIQV ALSKKSPYVQ TAHRVSGLML ASHTSIRHLF SKCLSQYDKL
401: RKKQAFLDNY RKFPMFADND LSEFDESRDI IESLVDEYKA CESPDYIKWG MEDPEQLMTG EGNASGVVDP KLAF

Arabidopsis Description

TUBG1Tubulin gamma-1 chain [Source:UniProtKB/Swiss-Prot;Acc:P38557]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.