CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037582_P001	Maize	cytosol, extracellular	99.36	99.36
Os05t0156600-01	Rice	cytosol	97.87	97.87
TraesCS1D01G107300.1	Wheat	cytosol	96.16	96.16
TraesCS1B01G124800.1	Wheat	cytosol	96.16	96.16
TraesCS1A01G099400.1	Wheat	cytosol	96.16	96.16
HORVU1Hr1G023030.2	Barley	cytosol	96.16	96.16
GSMUA_Achr1P14750_001	Banana	cytosol	96.59	94.77
VIT_15s0046g01350.t01	Wine grape	cytosol	94.03	93.04
Zm00001d009780_P003	Maize	cytosol	99.36	92.09
KRH68880	Soybean	endoplasmic reticulum	92.32	91.35
AT3G61650.1	Thale cress	cytosol	92.32	91.35
AT5G05620.1	Thale cress	cytosol	92.32	91.35
KRG97131	Soybean	cytosol	91.47	90.51
Bra007622.1-P	Field mustard	cytosol	91.04	90.27
CDX71723	Canola	cytosol	91.04	90.27
CDY11370	Canola	cytosol	91.04	90.27
PGSC0003DMT400039263	Potato	cytosol	90.19	89.24
Solyc03g111380.2.1	Tomato	cytosol	89.98	89.03
EER93354	Sorghum	cytosol	33.48	35.28
EER95686	Sorghum	cytosol	33.26	34.98
EES01623	Sorghum	cytosol	33.26	34.9
EES04582	Sorghum	cytosol	33.05	34.75
KXG32297	Sorghum	cytosol	33.05	34.75
EER90205	Sorghum	cytosol	32.84	34.53
EER93713	Sorghum	cytosol	32.2	33.93
OQU78011	Sorghum	cytosol	29.21	32.08
EER92631	Sorghum	cytosol	29.85	31.25
KXG37669	Sorghum	cytosol	29.64	30.82
KXG37668	Sorghum	cytosol	29.64	30.82
KXG36544	Sorghum	cytosol	29.21	30.44
EER93374	Sorghum	cytosol	28.57	29.78
OQU78051	Sorghum	cytosol	23.45	27.23

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.2.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	EntrezGene:8071186	UniProt:C5Z0K9
EnsemblPlants:EES19069	ProteinID:EES19069	ProteinID:EES19069.1	GO:GO:0000166	GO:GO:0000930	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007017	GO:GO:0007020
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0031122	InterPro:Gamma_tubulin
InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161
PRINTS:PR01164	ScanProsite:PS00227	PANTHER:PTHR11588	PANTHER:PTHR11588:SF7	SMART:SM00864	SMART:SM00865
EnsemblPlantsGene:SORBI_3009G052100	SUPFAM:SSF52490	SUPFAM:SSF55307	unigene:Sbi.4919	InterPro:Tub_FtsZ_C	InterPro:Tubulin
InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase
UniParc:UPI0001A88CF6	RefSeq:XP_002440639.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:5283699..5288742

Molecular Weight (calculated)

52844.1 Da

IEP (calculated)

5.783

GRAVY (calculated)

-0.274

Length

469 amino acids

Sequence
(BLAST)

001: MPREIITIQV GQCGNQIGME FWKQLCLEHG IGKDGLLEDF ATQGGDRKDV FFYQADDQHF IPRSLLIDLE PRVINGIQNS EYRNLYNHEN IFVAEHGGGA
101: GNNWASGYHQ GEQVVDDIMD MVDREADGSD SLEGFVLCHS IAGGTGSGMG SYLLETLNDR YSKKLVQTYS VFPNQMETSD VVVQPYNSLL TLKRLTLNAD
201: CVVVLDNTAL NRIAVERLHL SNPTFAQTNS LVSTVMSAST TTLRYPGYMN NDLVGLLASL IPTPRCHFLM TGYTPLTVER QVNMIRKTTV LDVMRRLLQT
301: KNIMVSSYAR TKEASQAKYI SILNIIQGEV DPTQVHESLQ RIRERKLVNF IDWAPASIQV ALSRKSPYVQ TTHRVSGLML ANHTSIRHLF SKCLGQYEKL
401: RKKQAFLDNY RKFPMFADND LSEFDESREI IESLVDEYKA CESPDYIKWG MEDPGEANVA AALDSKLVV

Best Arabidopsis Sequence Match ( AT5G05620.1 )
(BLAST)

001: MPREIITLQV GQCGNQIGME FWKQLCLEHG ISKDGILEDF ATQGGDRKDV FFYQADDQHY IPRALLIDLE PRVINGIQNG EYRNLYNHEN IFLSDHGGGA
101: GNNWASGYHQ GKGVEEEIMD MIDREADGSD SLEGFVLCHS IAGGTGSGMG SYLLETLNDR YSKKLVQTYS VFPNQMETSD VVVQPYNSLL TLKRLTLNAD
201: CVVVLDNTAL NRIAVERLHL TNPTFAQTNS LVSTVMSAST TTLRYPGYMN NDLVGLLASL IPTPRCHFLM TGYTPLTVER QANVIRKTTV LDVMRRLLQT
301: KNIMVSSYAR NKEASQAKYI SILNIIQGEV DPTQVHESLQ RIRERKLVNF IDWGPASIQV ALSKKSPYVQ TSHRVSGLML ASHTSIRHLF SRCLSQYDKL
401: RKKQAFLDNY RKFPMFADND LSEFDESRDI IESLVDEYKA CESPDYIKWG MEDPGQLMTG EGNASGVADP KLAF

Arabidopsis Description

TUBG2Tubulin gamma-2 chain [Source:UniProtKB/Swiss-Prot;Acc:P38558]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.