Factsheet for Zm00001d037582_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19069	Sorghum	cytosol	99.36	99.36
Os05t0156600-01	Rice	cytosol	97.23	97.23
HORVU1Hr1G023030.2	Barley	cytosol	95.52	95.52
TraesCS1A01G099400.1	Wheat	cytosol	95.52	95.52
TraesCS1B01G124800.1	Wheat	cytosol	95.52	95.52
TraesCS1D01G107300.1	Wheat	cytosol	95.52	95.52
GSMUA_Achr1P14750_001	Banana	cytosol	95.95	94.14
Zm00001d009780_P003	Maize	cytosol	98.72	91.5
Zm00001d035567_P001	Maize	nucleus	47.76	89.6
Zm00001d013636_P001	Maize	nucleus, plastid	44.14	79.01
Zm00001d036626_P001	Maize	cytosol	20.47	42.29
Zm00001d040509_P001	Maize	cytosol	19.83	41.89
Zm00001d046996_P001	Maize	cytosol	20.26	41.13
Zm00001d008216_P002	Maize	cytosol	20.47	40.17
Zm00001d034022_P001	Maize	cytosol	22.17	39.69
Zm00001d013139_P001	Maize	cytosol	23.67	37.88
Zm00001d027295_P002	Maize	plasma membrane	33.26	34.98
Zm00001d015348_P002	Maize	plastid	32.84	34.68
Zm00001d010275_P001	Maize	cytosol	21.96	34.56
Zm00001d033457_P001	Maize	plasma membrane	32.41	34.16
Zm00001d012556_P001	Maize	plastid	32.62	34.15
Zm00001d013612_P002	Maize	plasma membrane	32.2	33.78
Zm00001d048065_P002	Maize	cytosol, mitochondrion	29.85	31.25
Zm00001d043158_P001	Maize	plasma membrane	32.41	30.65
Zm00001d033850_P003	Maize	cytosol	29.42	30.6
Zm00001d013367_P001	Maize	plastid	29.42	30.6
Zm00001d021891_P001	Maize	cytosol	29.0	30.22
Zm00001d006651_P005	Maize	plasma membrane	29.0	30.22
Zm00001d013159_P001	Maize	cytosol	28.36	29.56
Zm00001d026623_P001	Maize	cytosol, plastid	16.84	19.04

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.2.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	EntrezGene:542424	ProteinID:AQK84386.1
EMBL:BT061329	UniProt:C0HG73	GO:GO:0000166	GO:GO:0000930	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005815	GO:GO:0005856	GO:GO:0005874	GO:GO:0007017	GO:GO:0007020
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0031122	InterPro:Gamma_tubulin
InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161
PRINTS:PR01164	ScanProsite:PS00227	PANTHER:PTHR11588	PANTHER:PTHR11588:SF7	UniProt:Q41808	SMART:SM00864
SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom
InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0000136A5D
EMBL:X78891	EnsemblPlantsGene:Zm00001d037582	EnsemblPlants:Zm00001d037582_P001	EnsemblPlants:Zm00001d037582_T001	:	:

Description

TUBG2 gamma-tubulin2

Coordinates

chr6:+:130519107..130523459

Molecular Weight (calculated)

52844.1 Da

IEP (calculated)

5.617

GRAVY (calculated)

-0.285

Length

469 amino acids

Sequence
(BLAST)

001: MPREIITIQV GQCGNQIGME FWKQLCLEHG IGKDGLLEDF ATQGGDRKDV FFYQADDQHF IPRSLLIDLE PRVINGIQNS EYRNLYNHEN IFVAEHGGGA
101: GNNWASGYHQ GEQVVDDIMD MVDREADGSD SLEGFVLCHS IAGGTGSGMG SYLLETLNDR YSKKLVQTYS VFPNQMETSD VVVQPYNSLL TLKRLTLNAD
201: CVVVLDNTAL NRIAVERLHL SNPTFAQTNS LVSTVMSAST TTLRYPGYMN NDLVGLLASL IPTPRCHFLM TGYTPLTVER QVNMIRKTTV LDVMRRLLQT
301: KNVMVSSYAR TKEASQAKYI SILNIIQGEV DPTQVHESLQ RIRERKLVNF IDWAPASIQV ALSRKSPYVQ TTHRVSGLML ANHTSIRHLF GKCLGQYEKL
401: RKKQAFLDNY RKFPMFADND LSEFDESREI IESLVDEYKA CESPDYIKWG MEDPGEANVA ADLDSKLVV

Best Arabidopsis Sequence Match ( AT5G05620.1 )
(BLAST)

001: MPREIITLQV GQCGNQIGME FWKQLCLEHG ISKDGILEDF ATQGGDRKDV FFYQADDQHY IPRALLIDLE PRVINGIQNG EYRNLYNHEN IFLSDHGGGA
101: GNNWASGYHQ GKGVEEEIMD MIDREADGSD SLEGFVLCHS IAGGTGSGMG SYLLETLNDR YSKKLVQTYS VFPNQMETSD VVVQPYNSLL TLKRLTLNAD
201: CVVVLDNTAL NRIAVERLHL TNPTFAQTNS LVSTVMSAST TTLRYPGYMN NDLVGLLASL IPTPRCHFLM TGYTPLTVER QANVIRKTTV LDVMRRLLQT
301: KNIMVSSYAR NKEASQAKYI SILNIIQGEV DPTQVHESLQ RIRERKLVNF IDWGPASIQV ALSKKSPYVQ TSHRVSGLML ASHTSIRHLF SRCLSQYDKL
401: RKKQAFLDNY RKFPMFADND LSEFDESRDI IESLVDEYKA CESPDYIKWG MEDPGQLMTG EGNASGVADP KLAF

Arabidopsis Description

TUBG2Tubulin gamma-2 chain [Source:UniProtKB/Swiss-Prot;Acc:P38558]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.