Factsheet for Zm00001d012556_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 23198870
plasma membrane: 23508561
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040509_P001	Maize	cytosol	48.66	98.2
Os05t0413200-01	Rice	plasma membrane	96.65	97.52
Zm00001d027295_P002	Maize	plasma membrane	95.09	95.52
Zm00001d036626_P001	Maize	cytosol	47.99	94.71
Zm00001d015348_P002	Maize	plastid	93.75	94.59
Zm00001d034022_P001	Maize	cytosol	55.13	94.27
Zm00001d013139_P001	Maize	cytosol	61.61	94.2
Zm00001d008216_P002	Maize	cytosol	49.78	93.31
Zm00001d046996_P001	Maize	cytosol	47.99	93.07
Zm00001d033457_P001	Maize	plasma membrane	91.52	92.13
Zm00001d013612_P002	Maize	plasma membrane	91.74	91.95
Zm00001d043158_P001	Maize	plasma membrane	97.1	87.7
Zm00001d010275_P001	Maize	cytosol	56.47	84.9
Zm00001d026623_P001	Maize	cytosol, plastid	47.99	51.81
Zm00001d033850_P003	Maize	cytosol	42.41	42.13
Zm00001d013367_P001	Maize	plastid	42.19	41.91
Zm00001d006651_P005	Maize	plasma membrane	41.52	41.33
Zm00001d021891_P001	Maize	cytosol	41.52	41.33
Zm00001d013159_P001	Maize	cytosol	41.07	40.89
Zm00001d048065_P002	Maize	cytosol, mitochondrion	40.62	40.62
Zm00001d037582_P001	Maize	cytosol, extracellular	34.15	32.62
Zm00001d009780_P003	Maize	cytosol	34.15	30.24
Zm00001d035567_P001	Maize	nucleus	15.18	27.2
Zm00001d013636_P001	Maize	nucleus, plastid	15.4	26.34

Protein Annotations

Gene3D:1.10.287.600	EntrezGene:100382290	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	ProteinID:AQK99860.1
EMBL:BT063783	InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin	UniProt:C0P664	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856
GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	PFAM:PF00091	PFAM:PF03953
PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF106
SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin
InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase
UniParc:UPI0001949005	EnsemblPlantsGene:Zm00001d012556	EnsemblPlants:Zm00001d012556_P001	EnsemblPlants:Zm00001d012556_T001	SEG:seg	:

Description

beta tubulin6 beta tubulin6

Coordinates

chr8:-:176577453..176580718

Molecular Weight (calculated)

50296.4 Da

IEP (calculated)

4.450

GRAVY (calculated)

-0.365

Length

448 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCDEHGI DTTGRYTGTS DLQLERVNVY YNEASCGRFV PRAVLMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIPPRG LSMASTFVGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDDEEAEYED EEEPADGM

Best Arabidopsis Sequence Match ( AT5G23860.2 )
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DSTGRYQGEN DLQLERVNVY YNEASCGRFV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEEGYEYEE DEVEVQEEQ

Arabidopsis Description

TUBB8Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UKM5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.