Factsheet for Zm00001d010275_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040509_P001	Maize	cytosol	72.82	97.75
Zm00001d008216_P002	Maize	cytosol	74.83	93.31
Zm00001d036626_P001	Maize	cytosol	69.13	90.75
Zm00001d046996_P001	Maize	cytosol	69.13	89.18
Zm00001d034022_P001	Maize	cytosol	76.85	87.4
Zm00001d013139_P001	Maize	cytosol	77.52	78.84
TraesCS1B01G269400.1	Wheat	cytosol	85.91	57.53
TraesCS1D01G258800.1	Wheat	cytosol	85.91	57.53
TraesCS1A01G258800.1	Wheat	golgi	85.57	57.3
Zm00001d012556_P001	Maize	plastid	84.9	56.47
TraesCS1B01G320800.1	Wheat	cytosol	84.56	56.38
TraesCS1D01G309200.1	Wheat	cytosol	84.56	56.38
TraesCS1A01G309700.1	Wheat	golgi	84.56	56.38
HORVU0Hr1G026030.2	Barley	cytosol	84.56	56.38
HORVU1Hr1G068170.1	Barley	cytosol	84.56	56.38
Zm00001d027295_P002	Maize	plasma membrane	82.89	55.38
Zm00001d015348_P002	Maize	plastid	80.54	54.05
Zm00001d033457_P001	Maize	plasma membrane	78.52	52.58
Zm00001d013612_P002	Maize	plasma membrane	78.86	52.57
Zm00001d043158_P001	Maize	plasma membrane	83.89	50.4
OQU78011	Sorghum	cytosol	70.81	49.41
HORVU1Hr1G064870.3	Barley	mitochondrion	85.57	48.57
Zm00001d021891_P001	Maize	cytosol	41.61	27.56
Zm00001d006651_P005	Maize	plasma membrane	41.28	27.33
Zm00001d013367_P001	Maize	plastid	40.6	26.83
Zm00001d048065_P002	Maize	cytosol, mitochondrion	40.27	26.79
Zm00001d013159_P001	Maize	cytosol	40.27	26.67
Zm00001d033850_P003	Maize	cytosol	40.27	26.61
Zm00001d037582_P001	Maize	cytosol, extracellular	34.56	21.96
Zm00001d009780_P003	Maize	cytosol	34.56	20.36
Zm00001d026623_P001	Maize	cytosol, plastid	26.51	19.04
Zm00001d035567_P001	Maize	nucleus	7.72	9.2
Zm00001d013636_P001	Maize	nucleus, plastid	7.38	8.4

Protein Annotations

MapMan:35.1	UniProt:A0A1D6FQ69	ProteinID:AQK93773.1	InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	InterPro:IPR036525	PFAM:PF00091	PRINTS:PR01161	PRINTS:PR01163
ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF106	SMART:SM00864	SUPFAM:SSF52490
SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase
UniParc:UPI00084494CE	EnsemblPlantsGene:Zm00001d010275	EnsemblPlants:Zm00001d010275_P001	EnsemblPlants:Zm00001d010275_T001	SEG:seg	:

Description

beta tubulin2 beta tubulin2

Coordinates

chr8:-:107054058..107056775

Molecular Weight (calculated)

32872.4 Da

IEP (calculated)

3.907

GRAVY (calculated)

-0.278

Length

298 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVCDEHGI DPTGRYMGTS DVQLERVNVY YNEASCGRFV PRAVLMDLEP GTMDAVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGIDLSSSEL NPIIQCFGIS VALSVSNDLF VPSGFQVCHS LGGGTGSGMG TLLISKIREE YPDRMMMTFS
201: VFPSPKVSDT VVEPYNATLS VHQLVENADE CMVLDNEALY DICFRTLKLT TPSCEGMDEM EFTEAESNMN DLVSEYQQYQ DATADEEADY EEEEAAAE

Best Arabidopsis Sequence Match ( AT5G12250.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVCDEHGI DPTGRYVGNS DLQLERVNVY YNEASCGRYV PRAILMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIAPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEGEYEEDE DEEEILDHE

Arabidopsis Description

TUBB6Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UPR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.