Factsheet for HORVU0Hr1G026030.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G068170.1	Barley	cytosol	100.0	100.0
TraesCS1D01G309200.1	Wheat	cytosol	100.0	100.0
TraesCS1B01G320800.1	Wheat	cytosol	100.0	100.0
TraesCS1A01G309700.1	Wheat	golgi	100.0	100.0
HORVU6Hr1G027620.1	Barley	plasma membrane	93.74	93.95
HORVU7Hr1G107100.2	Barley	cytosol, nucleus	93.29	93.5
HORVU3Hr1G078940.1	Barley	mitochondrion	96.2	85.49
OQU78011	Sorghum	cytosol	81.66	85.48
Zm00001d010275_P001	Maize	cytosol	56.38	84.56
HORVU1Hr1G064870.3	Barley	mitochondrion	97.54	83.05
HORVU5Hr1G100900.2	Barley	cytosol	93.29	82.41
HORVU4Hr1G002530.2	Barley	cytosol	89.71	81.5
HORVU4Hr1G087740.1	Barley	cytosol	72.04	68.66
HORVU2Hr1G037560.2	Barley	cytosol	34.9	42.74
HORVU4Hr1G009520.1	Barley	cytosol, plasma membrane	42.73	42.35
HORVU1Hr1G081280.1	Barley	cytosol	42.28	41.91
HORVU4Hr1G067370.1	Barley	cytosol	41.39	41.2
HORVU2Hr1G037550.2	Barley	cytosol	38.93	38.5
HORVU5Hr1G098960.2	Barley	cytosol, mitochondrion	42.51	38.15
HORVU2Hr1G037570.3	Barley	cytosol	36.69	36.94
HORVU1Hr1G023030.2	Barley	cytosol	34.45	32.84

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	UniProt:A5CFY7	EMBL:AM502852
InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010
GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	EnsemblPlantsGene:HORVU0Hr1G026030
EnsemblPlants:HORVU0Hr1G026030.2	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	PFAM:PF00091	PFAM:PF03953
PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF106
SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin
InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase
UniParc:UPI0000136A02	SEG:seg	:	:	:	:

Description

Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A5CFY7]

Coordinates

chrchrUn:-:136826815..136829162

Molecular Weight (calculated)

50311.5 Da

IEP (calculated)

4.450

GRAVY (calculated)

-0.343

Length

447 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVCDEHGI DPTGRYVGTS DLQLERVNVY YNEASCGRFV PRAVLMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQM YRSLTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIAPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATA DEEEELYEDE DDADLQE

Best Arabidopsis Sequence Match ( AT5G12250.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVCDEHGI DPTGRYVGNS DLQLERVNVY YNEASCGRYV PRAILMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIAPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEGEYEEDE DEEEILDHE

Arabidopsis Description

TUBB6Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UPR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.