Factsheet for HORVU4Hr1G009520.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

cytosol 4
extracellular 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G057000.1	Wheat	cytosol	100.0	100.0
TraesCS4B01G056700.1	Wheat	cytosol	100.0	100.0
TraesCS4A01G257800.1	Wheat	cytosol	100.0	100.0
Zm00001d013367_P001	Maize	plastid	99.56	99.56
KXG37669	Sorghum	cytosol	99.56	99.56
KXG37668	Sorghum	cytosol	99.56	99.56
Zm00001d033850_P003	Maize	cytosol	98.89	98.89
HORVU1Hr1G081280.1	Barley	cytosol	98.67	98.67
VIT_00s1322g00010.t01	Wine grape	cytosol	59.87	98.18
GSMUA_Achr7P17960_001	Banana	cytosol	85.37	96.98
HORVU2Hr1G037560.2	Barley	cytosol	75.61	93.42
Solyc12g088180.1.1	Tomato	cytosol	47.01	93.39
HORVU4Hr1G067370.1	Barley	cytosol	88.25	88.64
HORVU5Hr1G098960.2	Barley	cytosol, mitochondrion	95.79	86.75
HORVU2Hr1G037550.2	Barley	cytosol	86.7	86.5
HORVU2Hr1G037570.3	Barley	cytosol	82.71	84.01
CDY46272	Canola	cytosol	45.23	70.59
Bra020572.1-P	Field mustard	cytosol	63.86	61.54
CDY05559	Canola	mitochondrion	63.86	57.26
HORVU1Hr1G068170.1	Barley	cytosol	42.35	42.73
HORVU0Hr1G026030.2	Barley	cytosol	42.35	42.73
HORVU6Hr1G027620.1	Barley	plasma membrane	41.91	42.38
HORVU7Hr1G107100.2	Barley	cytosol, nucleus	41.69	42.15
HORVU3Hr1G078940.1	Barley	mitochondrion	42.35	37.97
HORVU4Hr1G002530.2	Barley	cytosol	40.58	37.2
HORVU5Hr1G100900.2	Barley	cytosol	41.69	37.15
HORVU1Hr1G064870.3	Barley	mitochondrion	42.35	36.38
HORVU4Hr1G087740.1	Barley	cytosol	33.04	31.77
HORVU1Hr1G023030.2	Barley	cytosol	31.04	29.85

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	EMBL:AK356463	InterPro:Alpha_tubulin
ncoils:Coil	UniProt:F2CXV9	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	EnsemblPlantsGene:HORVU4Hr1G009520	EnsemblPlants:HORVU4Hr1G009520.1
InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161
PRINTS:PR01162	ScanProsite:PS00227	PANTHER:PTHR11588	PANTHER:PTHR11588:SF242	SMART:SM00864	SMART:SM00865
SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf
InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0000136987	SEG:seg

Description

Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:F2CXV9]

Coordinates

chrchr4H:+:27194625..27197986

Molecular Weight (calculated)

49731.8 Da

IEP (calculated)

4.646

GRAVY (calculated)

-0.199

Length

451 amino acids

Sequence
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPGDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVNEFQTNLV PYPRIHFMLS SYAPVISAEK AYHEQLSVAE ITNSAFEPSS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVATIKTKRT IQFVDWCPTG FKCGINYQPP SVVPGGDLAK VQRAVCMISN STSVVEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEFD EGEDGDEGDE Y

Best Arabidopsis Sequence Match ( AT4G14960.2 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPGDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLNIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA6Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A178UXP7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.