Factsheet for Bra020572.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05559	Canola	mitochondrion	100.0	93.04
VIT_00s1322g00010.t01	Wine grape	cytosol	45.51	77.45
Solyc12g088180.1.1	Tomato	cytosol	34.83	71.81
Bra018825.1-P	Field mustard	cytosol	64.1	66.67
Bra014232.1-P	Field mustard	cytosol	64.1	66.67
Bra039648.1-P	Field mustard	cytosol	63.89	66.44
GSMUA_Achr7P17960_001	Banana	cytosol	55.13	64.99
HORVU1Hr1G081280.1	Barley	cytosol	61.97	64.3
TraesCS1A01G350200.1	Wheat	golgi	61.75	64.08
Os11t0247300-01	Rice	plasma membrane	61.75	64.08
TraesCS1B01G364500.3	Wheat	cytosol	61.75	64.08
TraesCS1D01G353100.5	Wheat	cytosol	61.75	64.08
TraesCS4A01G257800.1	Wheat	cytosol	61.54	63.86
KXG37669	Sorghum	cytosol	61.54	63.86
HORVU4Hr1G009520.1	Barley	cytosol, plasma membrane	61.54	63.86
TraesCS4B01G056700.1	Wheat	cytosol	61.54	63.86
TraesCS4D01G057000.1	Wheat	cytosol	61.54	63.86
Zm00001d033850_P003	Maize	cytosol	61.54	63.86
KXG37668	Sorghum	cytosol	61.32	63.64
Zm00001d013367_P001	Maize	plastid	61.32	63.64
Bra002261.1-P	Field mustard	cytosol	59.62	62.0
Bra020062.1-P	Field mustard	cytosol	59.62	62.0
Bra020061.1-P	Field mustard	cytosol	59.4	61.78
Bra006517.1-P	Field mustard	cytosol	58.76	61.11
Bra002260.1-P	Field mustard	cytosol	50.21	57.32
Bra015815.1-P	Field mustard	cytosol	28.85	30.2
Bra013481.1-P	Field mustard	cytosol	28.63	30.04
Bra027544.1-P	Field mustard	cytosol	28.42	29.89
Bra018184.1-P	Field mustard	cytosol	28.63	29.84
Bra039506.1-P	Field mustard	cytosol	28.42	29.82
Bra020912.1-P	Field mustard	cytosol	28.42	29.82
Bra019493.1-P	Field mustard	cytosol	28.63	29.78
Bra010114.1-P	Field mustard	cytosol	28.63	29.78
Bra008903.1-P	Field mustard	cytosol	28.42	29.69
Bra038795.1-P	Field mustard	cytosol	28.21	29.66
Bra033796.1-P	Field mustard	cytosol	28.42	29.62
Bra033737.1-P	Field mustard	cytosol	27.99	29.44
Bra018379.1-P	Field mustard	cytosol	28.21	29.4
Bra039987.1-P	Field mustard	cytosol	27.99	29.18
Bra009710.1-P	Field mustard	cytosol	27.78	28.95
Bra005395.1-P	Field mustard	cytosol	23.5	27.3
Bra007622.1-P	Field mustard	cytosol	21.58	21.35

Protein Annotations

MapMan:17.1.2.1.18	Gene3D:3.100.10.10	Gene3D:3.40.50.1440	InterPro:Alpha_tubulin	EnsemblPlantsGene:Bra020572	EnsemblPlants:Bra020572.1
EnsemblPlants:Bra020572.1-P	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:IPR036525	InterPro:L18e/L15P_sf
UniProt:M4DVM8	PFAM:PF00091	PFAM:PF03953	PFAM:PF17135	PRINTS:PR01161	PRINTS:PR01162
ScanProsite:PS00227	PANTHER:PTHR11588	PANTHER:PTHR11588:SF254	InterPro:Ribosomal_L18e/L15P	SMART:SM00864	SMART:SM00865
SUPFAM:SSF52080	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom
InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0002546AB1	SEG:seg	:

Description

AT4G14960 (E=4e-115) TUA6 | TUA6; structural constituent of cytoskeleton

Coordinates

chrA02:+:24482230..24484750

Molecular Weight (calculated)

51806.5 Da

IEP (calculated)

9.060

GRAVY (calculated)

-0.232

Length

468 amino acids

Sequence
(BLAST)

001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLLV KLYRFLVRRT GSKFDAVILK RLFMSKVNKA PLSLSKLVEF MKGKDGKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALVAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKLADN CTGLQGFLVF
201: NAVGGGTGSG LGSLLLERLS VDYGKKSKLG FTVYPSPQVS TSVVEPYNSV LSTHSLLEHT DVSILLDNEA IYDICRRSLN IERPTYTNLN RLVSQVISSL
301: TASLRFDGAL NVDVTEFQTN LVPYPRIHFM LSSYAPVISA EKAFHEQLSV AEITNSAFEP ASMMAKCDPR HGKYMACCLM YRCDVVPKDV NAAVGTIKTK
401: RTIQFVDWCS SAFDLMYAKR AFVHWYVGEG MEEGEFSEAR EDLAALEKDY EEVGAEGGDD EDDEGEEY

Best Arabidopsis Sequence Match ( AT1G04820.1 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLSIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA4Tubulin alpha-2 chain [Source:UniProtKB/Swiss-Prot;Acc:B9DGT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.