Factsheet for Bra006517.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70890	Canola	cytosol	99.11	99.11
CDX88875	Canola	cytosol	99.11	99.11
AT5G19780.1	Thale cress	cytosol	98.89	98.89
AT5G19770.1	Thale cress	cytosol	98.89	98.89
Bra020062.1-P	Field mustard	cytosol	98.44	98.44
Bra002261.1-P	Field mustard	cytosol	98.44	98.44
Bra002260.1-P	Field mustard	cytosol	88.44	97.07
Bra020061.1-P	Field mustard	cytosol	96.89	96.89
KRH58942	Soybean	nucleus	96.67	96.88
KRH42841	Soybean	cytosol, nucleus	96.44	96.44
HORVU2Hr1G037560.2	Barley	cytosol	78.0	96.16
TraesCS4D01G242700.1	Wheat	cytosol	91.78	91.98
TraesCS4B01G243100.1	Wheat	cytosol	91.78	91.98
TraesCS4A01G065700.1	Wheat	cytosol	91.56	91.76
EER92631	Sorghum	cytosol	91.33	91.74
HORVU4Hr1G067370.1	Barley	cytosol	91.33	91.54
Bra014232.1-P	Field mustard	cytosol	91.33	91.33
Zm00001d048065_P002	Maize	cytosol, mitochondrion	90.89	91.29
Bra039648.1-P	Field mustard	cytosol	90.89	90.89
Bra018825.1-P	Field mustard	cytosol	90.89	90.89
Os03t0219300-01	Rice	cytosol, plasma membrane, plastid	90.67	90.87
VIT_08s0007g07260.t01	Wine grape	cytosol	88.22	89.01
Bra020572.1-P	Field mustard	cytosol	61.11	58.76
Bra008903.1-P	Field mustard	cytosol	42.67	42.86
Bra039987.1-P	Field mustard	cytosol	42.22	42.32
Bra027544.1-P	Field mustard	cytosol	41.78	42.25
Bra039506.1-P	Field mustard	cytosol	41.78	42.15
Bra018379.1-P	Field mustard	cytosol	42.0	42.09
Bra018184.1-P	Field mustard	cytosol	42.0	42.09
Bra015815.1-P	Field mustard	cytosol	41.78	42.06
Bra019493.1-P	Field mustard	cytosol	42.0	42.0
Bra010114.1-P	Field mustard	cytosol	42.0	42.0
Bra033796.1-P	Field mustard	cytosol	41.78	41.87
Bra020912.1-P	Field mustard	cytosol	41.33	41.7
Bra009710.1-P	Field mustard	cytosol	41.56	41.65
Bra038795.1-P	Field mustard	cytosol	40.89	41.35
Bra033737.1-P	Field mustard	cytosol	40.89	41.35
Bra013481.1-P	Field mustard	cytosol	40.89	41.26
Bra005395.1-P	Field mustard	cytosol	36.89	41.19
Bra007622.1-P	Field mustard	cytosol	30.67	29.18
Os03t0780800-01	Rice	cytosol	0.67	1.27

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Alpha_tubulin	InterPro:Beta-tubulin_BS
EnsemblPlantsGene:Bra006517	EnsemblPlants:Bra006517.1	EnsemblPlants:Bra006517.1-P	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010
GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123
InterPro:IPR036525	InterPro:IPR037103	UniProt:M4CQM8	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161
PRINTS:PR01162	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF48	SMART:SM00864
SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom
InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000253FF59
SEG:seg	:	:	:	:	:

Description

AT5G19770 (E=5e-235) TUA3 | TUA3; structural constituent of cytoskeleton

Coordinates

chrA03:+:3877895..3880200

Molecular Weight (calculated)

49697.0 Da

IEP (calculated)

4.723

GRAVY (calculated)

-0.146

Length

450 amino acids

Sequence
(BLAST)

001: MREIISIHIG QAGIQVGNSC WELYCLEHGI QPDGMMPSDT TVGVAHDAFN TFFSETGAGK HVPRAIFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTV GKEIVDLCLD RVRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL ISQIISSLTT SLRFDGAINV DITEFQTNLV PYPRIHFMLS SYAPVISAAK AYHEQLSVPE ITNAVFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGLSRLKRT VQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN NTAVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEEDEGEDY

Best Arabidopsis Sequence Match ( AT5G19770.1 )
(BLAST)

001: MREIISIHIG QAGIQVGNSC WELYCLEHGI QPDGMMPSDT TVGVAHDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTV GKEIVDLCLD RVRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL ISQIISSLTT SLRFDGAINV DITEFQTNLV PYPRIHFMLS SYAPVISAAK AYHEQLSVPE ITNAVFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT VQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN NTAVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEEDEGEDY

Arabidopsis Description

TUBA3Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A178UTQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.