Factsheet for TraesCS4D01G242700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G243100.1	Wheat	cytosol	100.0	100.0
TraesCS4A01G065700.1	Wheat	cytosol	99.78	99.78
HORVU4Hr1G067370.1	Barley	cytosol	99.33	99.33
EER92631	Sorghum	cytosol	96.44	96.65
Zm00001d048065_P002	Maize	cytosol, mitochondrion	95.99	96.21
Os03t0219300-01	Rice	cytosol, plasma membrane, plastid	95.55	95.55
KRH06693	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	91.54	92.78
CDY42294	Canola	cytosol	92.87	92.67
CDY42295	Canola	cytosol	92.87	92.67
CDX92501	Canola	cytosol	92.65	92.44
CDX92502	Canola	cytosol	92.65	92.44
CDX70890	Canola	cytosol	92.65	92.44
Bra020062.1-P	Field mustard	cytosol	92.65	92.44
CDX88875	Canola	cytosol	92.65	92.44
Bra002261.1-P	Field mustard	cytosol	92.65	92.44
TraesCS2D01G202200.1	Wheat	cytosol	92.65	92.44
KRG94842	Soybean	cytosol, endoplasmic reticulum, mitochondrion	92.65	92.24
CDY44941	Canola	cytosol	92.43	92.22
CDY44942	Canola	cytosol	92.43	92.22
Bra006517.1-P	Field mustard	cytosol	91.98	91.78
Bra020061.1-P	Field mustard	cytosol	91.31	91.11
Bra002260.1-P	Field mustard	cytosol	82.85	90.73
AT1G64740.1	Thale cress	cytosol	89.98	89.78
TraesCS4D01G057000.1	Wheat	cytosol	89.09	88.69
TraesCS1D01G353100.5	Wheat	cytosol	88.86	88.47
TraesCS5D01G417700.1	Wheat	cytosol	88.2	87.8
VIT_08s0007g07260.t01	Wine grape	cytosol	84.63	85.2
TraesCS1D01G258800.1	Wheat	cytosol	40.98	41.35
TraesCS1D01G309200.1	Wheat	cytosol	40.98	41.16
TraesCS6D01G130500.2	Wheat	golgi	40.76	41.12
TraesCS7D01G454200.1	Wheat	cytosol	40.76	41.03
TraesCS5D01G424100.1	Wheat	cytosol	40.53	40.9
TraesCS4D01G015400.1	Wheat	cytosol	39.2	39.55
TraesCS3D01G326900.1	Wheat	plastid	40.53	36.47
TraesCS1D01G107300.1	Wheat	cytosol	31.4	30.06

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Alpha_tubulin	InterPro:Beta-tubulin_BS
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198
GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0005874	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	PFAM:PF00091	PFAM:PF03953
PRINTS:PR01161	PRINTS:PR01162	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF189
SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	EnsemblPlantsGene:TraesCS4D01G242700	EnsemblPlants:TraesCS4D01G242700.1
InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C
InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	TIGR:cd02186	SEG:seg	:	:

Description

No Description!

Coordinates

chr4D:+:405321655..405324400

Molecular Weight (calculated)

49890.1 Da

IEP (calculated)

4.838

GRAVY (calculated)

-0.193

Length

449 amino acids

Sequence
(BLAST)

001: MREIISIHIG QAGIQVGNSC WELYCLEHGI QPDGLMPSDT SVGVAKDAFN TFFSETGSGK HVPRALFVDL EPTVIDEVRT GAYRQLFHPE QLISHNEDAA
101: NNFARGHYTV GREVVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGRKSKLGFT IYPSPQISTA VVEPYNSVLS THSLIEHTDV
201: VVLLDNEAIY DICKRSLDIE RPTYTNLNRL ISQVISSLTT SLRFDGAINV DITEFQTNLV PYPRIHFMLS SYAPIISAEK AFHEQHSVPE ITNSVFEPSS
301: VMAKCDPRHG KYMACCLMYR GDVVPKDVNS AVHSIKTKRT VQFVDWCPTG FKCGINYQPP TVVPGGDLAK VRRAVCMISN NTAVAEVFSR IDRKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGE DDEDEGDEY

Best Arabidopsis Sequence Match ( AT1G04820.1 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLSIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA4Tubulin alpha-2 chain [Source:UniProtKB/Swiss-Prot;Acc:B9DGT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.