Factsheet for TraesCS3D01G326900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G363500.1	Wheat	golgi, unclear	89.38	99.78
TraesCS3A01G333300.1	Wheat	cytosol	89.98	99.56
Os01t0805900-01	Rice	plasma membrane	87.98	98.21
PGSC0003DMT400072466	Potato	cytosol	87.37	97.54
KXG32297	Sorghum	cytosol	86.97	97.31
TraesCS1D01G258800.1	Wheat	cytosol	86.57	97.08
Solyc10g080940.1.1	Tomato	nucleus	87.58	96.68
GSMUA_Achr3P18460_001	Banana	cytosol	74.75	96.63
HORVU3Hr1G078940.1	Barley	mitochondrion	97.39	96.62
TraesCS1D01G309200.1	Wheat	cytosol	86.17	96.2
VIT_17s0000g02450.t01	Wine grape	cytosol	85.17	95.51
TraesCS6D01G130500.2	Wheat	golgi	84.57	94.83
TraesCS5D01G424100.1	Wheat	cytosol	83.97	94.16
TraesCS7D01G454200.1	Wheat	cytosol	83.77	93.72
KRH41834	Soybean	cytosol	82.97	93.03
KRH60536	Soybean	endoplasmic reticulum	82.57	92.58
TraesCS4D01G015400.1	Wheat	cytosol	81.76	91.69
TraesCS4D01G057000.1	Wheat	cytosol	38.28	42.35
TraesCS1D01G353100.5	Wheat	cytosol	38.08	42.13
TraesCS5D01G417700.1	Wheat	cytosol	37.68	41.69
TraesCS2D01G202200.1	Wheat	cytosol	37.07	41.11
TraesCS4D01G242700.1	Wheat	cytosol	36.47	40.53
TraesCS1D01G107300.1	Wheat	cytosol	31.06	33.05

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Beta_tubulin	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856
GO:GO:0005874	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161
PRINTS:PR01163	ScanProsite:PS00227	PANTHER:PTHR11588	PANTHER:PTHR11588:SF241	SMART:SM00864	SMART:SM00865
SUPFAM:SSF52490	SUPFAM:SSF55307	EnsemblPlantsGene:TraesCS3D01G326900	EnsemblPlants:TraesCS3D01G326900.1	InterPro:Tub_FtsZ_C	InterPro:Tubulin
InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase
TIGR:cd02187	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3D:+:438941214..438944093

Molecular Weight (calculated)

55810.2 Da

IEP (calculated)

4.799

GRAVY (calculated)

-0.356

Length

499 amino acids

Sequence
(BLAST)

001: MPAVPSAAHG YLIPPALASL LPGHHTPSSP TRPLPSRRRL FCLREPSHIS AKMREILHIQ GGQCGNQIGA KFWEVVCDEH GIDPTGRYTG TSDLQLERVN
101: VYYNEASCGR FVPRAVLMDL EPGTMDSVRT GPYGQIFRPD NFVFGQSGAG NNWAKGHYTE GAELIDSVLD VVRKEAENCD CLQGFQVCHS LGGGTGSGMG
201: TLLISKIREE YPDRMMLTFS VFPSPKVSDT VVEPYNATLS VHQLVENADE CMVLDNEALY DICFRTLKLT TPSFGDLNHL ISATMSGVTC CLRFPGQLNS
301: DLRKLAVNLI PFPRLHFFMV GFAPLTSRGS QQYRALTVPE LTQQMWDAKN MMCAADPRHG RYLTASAMFR GKMSTKEVDE QMINVQNKNS SYFVEWIPNN
401: VKSSVCDIPP TGLSMASTFV GNSTSIQEMF RRVSEQFTAM FRRKAFLHWY TGEGMDEMEF TEAESNMNDL VSEYQQYQDA TADEEGEYED EDQEPEEDM

Best Arabidopsis Sequence Match ( AT5G23860.2 )
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DSTGRYQGEN DLQLERVNVY YNEASCGRFV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEEGYEYEE DEVEVQEEQ

Arabidopsis Description

TUBB8Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UKM5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.