Factsheet for Bra009710.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88051	Canola	cytosol	94.88	100.0
CDX80390	Canola	cytosol	99.78	99.78
AT5G23860.1	Thale cress	cytosol	99.33	99.33
KRG91525	Soybean	nucleus	98.0	98.21
KRH35301	Soybean	nucleus	98.0	98.21
VIT_02s0025g03680.t01	Wine grape	cytosol	96.88	97.32
Solyc06g035970.2.1	Tomato	nucleus	96.44	96.87
Os03t0105600-01	Rice	plasma membrane	96.44	96.87
EER95686	Sorghum	cytosol	96.21	96.86
Solyc03g025730.2.1	Tomato	nucleus	95.99	96.85
Zm00001d040509_P001	Maize	cytosol	47.88	96.85
PGSC0003DMT400037093	Potato	cytosol	96.21	96.64
PGSC0003DMT400076938	Potato	cytosol	96.21	96.64
TraesCS5A01G534300.1	Wheat	cytosol	96.21	96.64
TraesCSU01G137900.1	Wheat	cytosol	96.21	96.43
Bra018379.1-P	Field mustard	cytosol	96.21	96.21
TraesCS4B01G366500.1	Wheat	cytosol	95.99	95.99
GSMUA_Achr1P17290_001	Banana	cytosol	78.84	95.94
Bra039987.1-P	Field mustard	cytosol	95.77	95.77
Bra019493.1-P	Field mustard	cytosol	95.77	95.56
Bra010114.1-P	Field mustard	cytosol	95.77	95.56
Bra018184.1-P	Field mustard	cytosol	95.55	95.55
Bra033796.1-P	Field mustard	cytosol	95.32	95.32
Bra008903.1-P	Field mustard	cytosol	94.88	95.09
Bra020912.1-P	Field mustard	cytosol	91.98	92.6
Bra015815.1-P	Field mustard	cytosol	91.76	92.17
Bra038795.1-P	Field mustard	cytosol	91.31	92.13
Zm00001d008216_P002	Maize	cytosol	49.0	92.05
Bra027544.1-P	Field mustard	cytosol	91.09	91.91
Bra039506.1-P	Field mustard	cytosol	91.09	91.7
Bra033737.1-P	Field mustard	cytosol	90.65	91.46
Bra013481.1-P	Field mustard	cytosol	90.65	91.26
Bra005395.1-P	Field mustard	cytosol	78.17	87.1
Bra039648.1-P	Field mustard	cytosol	42.32	42.22
Bra014232.1-P	Field mustard	cytosol	42.32	42.22
Bra018825.1-P	Field mustard	cytosol	42.09	42.0
Bra020062.1-P	Field mustard	cytosol	41.87	41.78
Bra020061.1-P	Field mustard	cytosol	41.65	41.56
Bra006517.1-P	Field mustard	cytosol	41.65	41.56
Bra002261.1-P	Field mustard	cytosol	41.43	41.33
Bra002260.1-P	Field mustard	cytosol	36.75	40.24
Bra007622.1-P	Field mustard	cytosol	34.97	33.19
Bra020572.1-P	Field mustard	cytosol	28.95	27.78

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin
EnsemblPlantsGene:Bra009710	EnsemblPlants:Bra009710.1	EnsemblPlants:Bra009710.1-P	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874
GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	UniProt:M4CZR3	PFAM:PF00091	PFAM:PF03953
PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF264
SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin
InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase
UniParc:UPI000253F107	SEG:seg	:	:	:	:

Description

AT5G23860 (E=1e-247) TUB8 | TUB8; structural constituent of cytoskeleton

Coordinates

chrA06:+:16685147..16687205

Molecular Weight (calculated)

50598.7 Da

IEP (calculated)

4.436

GRAVY (calculated)

-0.388

Length

449 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DSTGRYQGES DLQLERVNVY YNEASCGRFV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEEGYEYEE DEEEVQEEQ

Best Arabidopsis Sequence Match ( AT5G23860.2 )
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DSTGRYQGEN DLQLERVNVY YNEASCGRFV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEEGYEYEE DEVEVQEEQ

Arabidopsis Description

TUBB8Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UKM5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.