CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35301	Soybean	nucleus	99.78	99.78
Bra009710.1-P	Field mustard	cytosol	98.21	98.0
VIT_16s0050g00380.t01	Wine grape	cytosol	98.21	98.0
CDX88051	Canola	cytosol	93.08	97.89
CDX80390	Canola	cytosol	97.99	97.77
AT5G23860.1	Thale cress	cytosol	97.99	97.77
Solyc06g035970.2.1	Tomato	nucleus	96.65	96.87
PGSC0003DMT400076938	Potato	cytosol	96.65	96.87
Os03t0105600-01	Rice	plasma membrane	96.21	96.42
EER95686	Sorghum	cytosol	95.98	96.41
Solyc03g025730.2.1	Tomato	nucleus	95.76	96.4
TraesCS5A01G534300.1	Wheat	cytosol	95.98	96.2
PGSC0003DMT400037093	Potato	cytosol	95.98	96.2
TraesCSU01G137900.1	Wheat	cytosol	95.98	95.98
Zm00001d040509_P001	Maize	cytosol	47.54	95.95
GSMUA_Achr1P17290_001	Banana	cytosol	79.02	95.94
KRH75786	Soybean	nucleus	95.98	95.77
KRH65977	Soybean	nucleus	95.98	95.77
TraesCS4B01G366500.1	Wheat	cytosol	95.76	95.55
KRH11812	Soybean	nucleus	94.42	94.84
KRH36829	Soybean	nucleus	94.2	94.62
KRH58404	Soybean	nucleus	93.3	94.57
KRH42279	Soybean	cytosol	93.08	94.13
KRG95065	Soybean	plasma membrane	94.42	94.0
KRH66728	Soybean	nucleus	93.97	93.76
KRH05958	Soybean	nucleus	91.74	91.54
KRH41834	Soybean	cytosol	90.62	91.24
Zm00001d008216_P002	Maize	cytosol	48.66	91.21
KRH51701	Soybean	nucleus	91.07	91.07
KRH41169	Soybean	cytosol	90.18	90.79
KRH61035	Soybean	nucleus	90.85	90.65
KRH60536	Soybean	endoplasmic reticulum	89.96	90.56
KRH17435	Soybean	nucleus	91.74	89.93
KRH59870	Soybean	endoplasmic reticulum	88.84	89.24
KRH04356	Soybean	cytosol	26.12	46.61
KRH77187	Soybean	endoplasmic reticulum	42.19	41.91
KRH35640	Soybean	cytosol, nucleus	41.96	41.87
KRG91143	Soybean	nucleus	41.96	41.87
KRH28301	Soybean	cytosol, endoplasmic reticulum	41.96	41.69
KRH06693	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	41.07	41.53
KRH58942	Soybean	nucleus	41.29	41.2
KRH52851	Soybean	cytosol, nucleus	41.52	41.15
KRH62139	Soybean	nucleus	41.52	41.15
KRH42841	Soybean	cytosol, nucleus	41.29	41.11
KRG94842	Soybean	cytosol, endoplasmic reticulum, mitochondrion	41.29	41.02
KRH08505	Soybean	cytosol, endoplasmic reticulum, nucleus	40.62	40.99
KRH58181	Soybean	nucleus	41.07	40.89
KRH04357	Soybean	cytosol	12.72	33.53
KRH68880	Soybean	endoplasmic reticulum	34.82	32.91
KRG97131	Soybean	cytosol	34.82	32.91

Protein Annotations

Gene3D:1.10.287.600	EntrezGene:100793406	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	EMBL:ACUP02012689
InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin	ncoils:Coil	EnsemblPlantsGene:GLYMA_20G159200	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874
GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
UniProt:I1NGT9	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	EnsemblPlants:KRG91525	ProteinID:KRG91525
ProteinID:KRG91525.1	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227
ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF264	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490
SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf
InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000233DE75	SEG:seg	:

Description

hypothetical protein

Coordinates

chr20:+:39753051..39755508

Molecular Weight (calculated)

50423.5 Da

IEP (calculated)

4.456

GRAVY (calculated)

-0.388

Length

448 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DSTGRYQGDN ELQLERVNVY YNEASCGRFV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEGYEYEDE EEPQEDEA

Best Arabidopsis Sequence Match ( AT5G23860.2 )
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DSTGRYQGEN DLQLERVNVY YNEASCGRFV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEEGYEYEE DEVEVQEEQ

Arabidopsis Description

TUBB8Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UKM5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.